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Transcription Factor Regulatory Networks
This book covers various state-of-the-art techniques regarding the associations between transcription factors (TFs) and genes, with a focus on...
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Identification and expression analysis of nuclear factor Y transcription factor genes under drought, cold and Eldana infestation in sugarcane (Saccharum spp. hybrid)
BackgroundThe Nuclear Factor Y (NF-Y) transcription factor (TF) gene family plays a crucial role in plant development and response to stress. Limited...
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Factor analysis applied in genomic prediction considering different density marker panels in rice
The study objective was to evaluate the application of factor analysis (FA) on genomic prediction considering different density marker panels. The FA...
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Categorization of Sugar Beet Varieties for Water Saving in Sandy Soils Using Factor Analysis Scores
Water shortage in dry and semi-arid regions is a major agricultural challenge. This study investigated the performance of ten imported monogerm sugar...
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Genome-wide characterization, evolutionary analysis, and expression pattern analysis of the trihelix transcription factor family and gene expression analysis under MeJA treatment in Panax ginseng
Panax ginseng is a well-known medicinal plant with several pharmacological uses in China. The trihelix family transcription factors, also known as GT...
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Genome-wide identification and analysis of the growth-regulating factor (GRF) family in sweet cherry
Growth-regulating factor (GRF) proteins are vital in regulating plant growth, development, and abiotic stress response. However, little information...
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A new Bayesian factor analysis method improves detection of genes and biological processes affected by perturbations in single-cell CRISPR screening
Clustered regularly interspaced short palindromic repeats (CRISPR) screening coupled with single-cell RNA sequencing has emerged as a powerful tool...
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Data-driven structural analysis of small cell lung cancer transcription factor network suggests potential subtype regulators and transition pathways
Small cell lung cancer (SCLC) is an aggressive disease and challenging to treat due to its mixture of transcriptional subtypes and subtype...
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Diabetes Mellitus Type 2 as a Risk Factor and Outcome Modifier for Cryptococcosis in HIV Negative, Non-transplant Patients, a Propensity Score Match Analysis
Cryptococcosis is an opportunistic fungal infection of worldwide distribution with significant associated morbidity and mortality. HIV, organ...
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Wildfire risk exploration: leveraging SHAP and TabNet for precise factor analysis
BackgroundUnderstanding the intricacies of wildfire impact across diverse geographical landscapes necessitates a nuanced comprehension of fire...
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Mutational analysis of pig tissue factor pathway inhibitor α to increase anti-coagulation activity in pig-to-human xenotransplantation
Blood coagulation mediated by pig tissue factor (TF), which is expressed in pig tissues, causes an instant blood-mediated inflammatory reaction...
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Nuclear Transcription Factor Detection
Cellular fate is determined by the activity of nuclear transcription factors. Here, we describe a series of protocols for detecting transcription...
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A Comprehensive Pan-Cancer Analysis of Cytochrome C Oxidase Assembly Factor 1 (COA1) Reveals Instrumental Role of Mitochondrial Protein Assembly in Cancer that Modulates Disease Progression and Prognostic Outcome
Cytochrome c oxidase assembly factor 1 (COA1), a mitochondrial respiratory chain complex assembly factor protein of inner mitochondrial membrane...
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Assessing the Activity of Transcription Factor FoxO1
The transcription factor FoxO1 (forkhead box O1) regulates genes that are involved in development, metabolism, cellular innovation, longevity, and...
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Genome-wide identification and expression pattern analysis of the kiwifruit GRAS transcription factor family in response to salt stress
BackgroundGRAS is a family of plant-specific transcription factors (TFs) that play a vital role in plant growth and development and response to...
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Hybrid allele-specific ChIP-seq analysis identifies variation in brassinosteroid-responsive transcription factor binding linked to traits in maize
BackgroundGenetic variation in regulatory sequences that alter transcription factor (TF) binding is a major cause of phenotypic diversity....
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Identification of a novel transcription factor under long-term drought resistance in highland barley: a DNA affinity purification sequencing-based transcriptomic analysis
Stress emanating from drought condition is one of the inevitable conditions that occurs in many environments and spread across borders and results in...
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Genome-wide analysis of plant specific YABBY transcription factor gene family in carrot (Dacus carota) and its comparison with Arabidopsis
YABBY gene family is a plant-specific transcription factor with DNA binding domain involved in various functions i.e. regulation of style, length of...
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Genome-wide identification, classification and expression analysis of the heat shock transcription factor family in Garlic (Allium sativum L.)
BackgroundThe heat shock transcription factor (HSF) plays a crucial role in the regulatory network by coordinating responses to heat stress as well...
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Tumor necrosis factor alpha induced protein 3, interleukin 10, tumor necrosis factor alpha, and interleukin 17 F genes polymorphisms in Algerian patients with rheumatoid arthritis
BackgroundRheumatoid arthritis (RA) is a systemic autoimmune disease with chronic inflammation. Its pathogenesis involves immunological, genetic, and...