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A comparison of single-coverage and multi-coverage metagenomic binning reveals extensive hidden contamination
Metagenomic binning has revolutionized the study of uncultured microorganisms. Here we compare single- and multi-coverage binning on the same set of...
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Conserving useful plants for a sustainable future: species coverage, spatial distribution, and conservation status within the Millennium Seed Bank collection
A substantially rich diversity of the world’s recorded useful plants (UPs) is captured within the Millennium Seed Bank collection hosted by the Royal...
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Generalized data-driven optimal path planning framework for uniform coverage missions using crop spraying UAVs
Unmanned aerial vehicle (UAV) based crop spraying has become a popular alternative in the field of precision agriculture. One of the key goals of UAV...
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Estimating microhaplotype allele frequencies from low-coverage or pooled sequencing data
BackgroundMicrohaplotypes have the potential to be more cost-effective than SNPs for applications that require genetic panels of highly variable...
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Ultra-fast label-free quantification and comprehensive proteome coverage with narrow-window data-independent acquisition
Mass spectrometry (MS)-based proteomics aims to characterize comprehensive proteomes in a fast and reproducible manner. Here we present the...
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Karst vegetation coverage detection using UAV multispectral vegetation indices and machine learning algorithm
BackgroundKarst vegetation is of great significance for ecological restoration in karst areas. Vegetation Indices (VIs) are mainly related to plant...
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KIN: a method to infer relatedness from low-coverage ancient DNA
Genetic kinship of ancient individuals can provide insights into their culture and social hierarchy, and is relevant for downstream genetic analyses....
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Improved computations for relationship inference using low-coverage sequencing data
Pedigree inference, for example determining whether two persons are second cousins or unrelated, can be done by comparing their genotypes at a...
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Identification of Induced Copy Number Variation from Low Coverage Sequence Data
Induced mutations have been an important tool for plant breeding and functional genomics for more than 80 years. Novel mutations can be induced by...
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Restoration through trenches does not demand organic fertilization and sawdust coverage on plant establishment
Forest restoration in post-open pit mining areas is complex and faces the challenge of “recreating” the soil under horizontal disruption,...
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Karyoty** of aneuploid and polyploid plants from low coverage whole-genome resequencing
BackgroundKaryotype, as a basic characteristic of species, provides valuable information for fundamental theoretical research and germplasm resource...
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correctKin: an optimized method to infer relatedness up to the 4th degree from low-coverage ancient human genomes
Kinship analysis from very low-coverage ancient sequences has been possible up to the second degree with large uncertainties. We propose a new,...
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Inferring biological kinship in ancient datasets: comparing the response of ancient DNA-specific software packages to low coverage data
BackgroundThe inference of biological relations between individuals is fundamental to understanding past human societies. Caregiving, resource...
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Tagging large CNV blocks in wheat boosts digitalization of germplasm resources by ultra-low-coverage sequencing
BackgroundThe massive structural variations and frequent introgression highly contribute to the genetic diversity of wheat, while the huge and...
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Adaptive coding for DNA storage with high storage density and low coverage
The rapid development of information technology has generated substantial data, which urgently requires new storage media and storage methods. DNA,...
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Prider: multiplexed primer design using linearly scaling approximation of set coverage
BackgroundDesigning oligonucleotide primers and probes is one of the key steps of various laboratory experiments such as multiplexed PCR or digital...
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Broad-scale spatial distribution and microhabitat-scale substrate association of seven angelfish species (family Pomacanthidae) in an Okinawan coral reef
Species-specific spatial distribution in relation to environmental characteristics underpins the species diversity of coral reef fishes. This study...
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Variation in shoot architecture traits and their relationship to canopy coverage and light interception in soybean (Glycine max)
BackgroundIn soybeans, faster canopy coverage (CC) is a highly desirable trait but a fully covered canopy is unfavorable to light interception at...
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Binning long reads in metagenomics datasets using composition and coverage information
BackgroundAdvancements in metagenomics sequencing allow the study of microbial communities directly from their environments. Metagenomics binning is...
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Autonomous paddy field puddling and leveling operations based on full-coverage path generation and tracking
In planning the path for a puddling and leveling tractor in a paddy field, achieving multiple leveling across the whole area with minimal traversal...
