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  1. Long-term patterns of an interconnected core marine microbiota

    Background

    Ocean microbes constitute ~ 70% of the marine biomass, are responsible for ~ 50% of the Earth’s primary production and are crucial for...

    Anders K. Krabberød, Ina M. Deutschmann, ... Ramiro Logares in Environmental Microbiome
    Article Open access 07 May 2022
  2. Core hyphosphere microbiota of Fusarium oxysporum f. sp. niveum

    Background

    Bacteria and fungi are dynamically interconnected, leading to beneficial or antagonistic relationships with plants. Within this...

    Vanessa E. Thomas, Sanjay Antony-Babu in Environmental Microbiome
    Article Open access 09 March 2024
  3. A core root bacteria contribute to plant growth and anisodine accumulation of Anisodus tanguticus

    Background

    Although it is well recognized that core root microorganisms contribute to plant health and productivity, little is known about their role...

    Bo Wang, Chen Chen, ... Guoying Zhou in BMC Plant Biology
    Article Open access 19 December 2023
  4. Core microbiome and bacterial diversity of the Italian Mediterranean river buffalo milk

    Abstract

    Milk is one of the most nutritionally complete foods and plays an important role in the human diet. Buffalo milk represents 15% of worldwide...

    Francesca Luziatelli, Francesca Melini, ... Maurizio Ruzzi in Applied Microbiology and Biotechnology
    Article 11 February 2023
  5. The salivary microbiome shows a high prevalence of core bacterial members yet variability across human populations

    Human saliva contains diverse bacterial communities, reflecting health status, dietary patterns and contributing to variability in the sensory...

    **nwei Ruan, Jiaqiang Luo, ... Kate Howell in npj Biofilms and Microbiomes
    Article Open access 20 October 2022
  6. Brown and grey morphs differ in their nocturnality in the polymorphic scops owl (Otus scops)

    Abstract

    Detectability of morphs in different light environments is one of the mechanisms favoring the persistence of color polymorphism via...

    Deseada Parejo, Juan Rodríguez-Ruiz, ... Jesús M. Avilés in Behavioral Ecology and Sociobiology
    Article Open access 03 May 2023
  7. Core microbiota drive multi-functionality of the soil microbiome in the Cinnamomum camphora coppice planting

    Background

    Cinnamomum camphora (L.) Presl ( C. camphora ) is an evergreen broad-leaved tree cultivated in subtropical China. The use of C. camphora as...

    Luyuan Sun, Guilong Li, ... Jie Zhang in BMC Microbiology
    Article Open access 10 January 2024
  8. Dynamics of species-rich predator–prey networks and seasonal alternations of core species

    In nature, entangled webs of predator–prey interactions constitute the backbones of ecosystems. Uncovering the network architecture of such trophic...

    Sayaka S. Suzuki, Yuki G. Baba, Hirokazu Toju in Nature Ecology & Evolution
    Article 17 July 2023
  9. Assigning Taxonomy, Building Phylogenetic Tree

    Taxonomic classification of the representative sequences and clustering of OTUs (Operational Taxonomic Units) are two core steps in bioinformatic...
    Chapter 2023
  10. Compositional and functional diversities of core microbial communities in wild and artificial Ophiocordyceps sinensis

    Ophiocordyceps sinensis is an entomogenous fungus, and its wildlife resource is very insufficient, as it is widely traded as a natural health...

    Tao Sun, Weiqiu Zou, ... Hong Yu in International Microbiology
    Article 13 February 2023
  11. The core bacterial microbiome of banana (Musa spp.)

    Background

    Bananas ( Musa spp.) are a globally significant crop and are severely afflicted by diseases for which there are no effective chemical...

    Henry W. G. Birt, Anthony B. Pattison, ... Paul G. Dennis in Environmental Microbiome
    Article Open access 08 September 2022
  12. A core of functional complementary bacteria infects oysters in Pacific Oyster Mortality Syndrome

    Background

    The Pacific oyster Crassostrea gigas is one of the main cultivated invertebrate species worldwide. Since 2008, oyster juveniles have been...

    Camille Clerissi, **ng Luo, ... Guillaume Mitta in Animal Microbiome
    Article Open access 03 May 2023
  13. Core microbes closely related with the nutrients and flavor of sweet fermented oats (whole grain food) from China

    Increased attention has been given to whole grain and plant-based foods due to health concerns. Sweet fermented oats (SFOs) are such traditional...

    Fei Ren, Ming Liu, ... Bin Tan in World Journal of Microbiology and Biotechnology
    Article 28 June 2023
  14. Emergent “core communities” of microbes, meiofauna and macrofauna at hydrothermal vents

    Assessment of ecosystem health entails consideration of species interactions within and between size classes to determine their contributions to...

    S. A. Murdock, V. Tunnicliffe, ... S. K. Juniper in ISME Communications
    Article Open access 21 June 2021
  15. Stronger Geographic Limitations Shape a Rapid Turnover and Potentially Highly Connected Network of Core Bacteria on Microplastics

    Core microbiota is shared microbial taxa within the same habitat, which is important for understanding the stable and consistent components of the...

    Weihong Zhang, Wenjie Wan, ... Minxia Liu in Microbial Ecology
    Article 31 March 2022
  16. Marine signature taxa and core microbial community stability along latitudinal and vertical gradients in sediments of the deepest freshwater lake

    Lake Baikal is the deepest (~1.6 km) and most voluminous freshwater reservoir on Earth. Compared to plankton, its benthos remains poorly explored....

    Guillaume Reboul, David Moreira, ... Purificación López-García in The ISME Journal
    Article 19 May 2021
  17. 16S-rRNA-Amplicon-Sequenzierung für Metagenomik

    Die 16S-rRNA-Amplicon-Sequenzierungstechnik ist eine Mikrobiomanalyse, bei der verschiedene Proben gleichzeitig mit Hilfe von Multiplexing analysiert...
    Henrik Christensen, Anna Jasmine Andersson, ... Josef Korbinian Vogt in Einführung in die Bioinformatik in der Mikrobiologie
    Chapter 2023
  18. Hive Transplantation Has Minimal Impact on the Core Gut Microbiome of the Australian Stingless Bee, Tetragonula carbonaria

    Bacteria residing in the guts of pollinating insects play a key role in nutrient acquisition, digestion, and resistance to pests and diseases....

    T. J. T. Mills, T. M. Nelson, ... B. A. Neilan in Microbial Ecology
    Article Open access 24 April 2023
  19. Identification and reconstruction of the core microbiota in natural fermentation systems: a case study of jiuyao

    As a saccharifying and fermenting starter, jiuyao is indispensable for huangjiu brewing by providing abundant microorganisms and hydrolytic enzymes....

    Shuang** Liu, Zhuoyue Zheng, ... Jian Mao in Systems Microbiology and Biomanufacturing
    Article 28 April 2024
  20. Microbial succession and exploration of higher alcohols-producing core bacteria in northern Huangjiu fermentation

    Higher alcohols (HAs) are abundant compounds that provide important flavors in Huangjiu, but they also cause hangover. Previous studies have shown...

    Yi Yan, Le** Sun, ... Qing Ren in AMB Express
    Article Open access 18 June 2022
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