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An evolutionary view of the Fusarium core genome
Fusarium , a member of the Ascomycota fungi, encompasses several pathogenic species significant to plants and animals. Some phytopathogenic species...
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Reconstruction of the last bacterial common ancestor from 183 pangenomes reveals a versatile ancient core genome
BackgroundCumulative sequencing efforts have yielded enough genomes to construct pangenomes for dozens of bacterial species and elucidate...
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CoreSNP: an efficient pipeline for core marker profile selection from genome-wide SNP datasets in crops
BackgroundDNA marker profiles play a crucial role in the identification and registration of germplasm, as well as in the distinctness, uniformity,...
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RIBAP: a comprehensive bacterial core genome annotation pipeline for pangenome calculation beyond the species level
Microbial pangenome analysis identifies present or absent genes in prokaryotic genomes. However, current tools are limited when analyzing species...
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The compact genome of the sponge Oopsacas minuta (Hexactinellida) is lacking key metazoan core genes
BackgroundExplaining the emergence of the hallmarks of bilaterians is a central focus of evolutionary developmental biology—evodevo—and evolutionary...
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Sifting through the core-genome to identify putative cross-protective antigens against Riemerella anatipestifer
AbstractInfectious serositis of ducks, caused by Riemerella anatipestifer , is one of the main infectious diseases that harm commercial ducks....
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Genome
All genetic information is recorded in one or a few DNA molecules that constitute an organism’s genome. Although the cells of an organism vary...
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Genome-Wide Identification and Molecular Characterization of Core ABA Signaling Components Under Abiotic Stresses and During Development in Chickpea
Abscisic acid (ABA) signaling is vital for plant's response to abiotic stresses and development. Core components of ABA signaling include ABA...
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Comparative Genome Annotation
Newly sequenced genomes are being added to the tree of life at an unprecedented fast pace. A large proportion of such new genomes are...
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Genome Rearrangement Analysis
Genome rearrangements are mutations that change the gene content of a genome or the arrangement of the genes on a genome. Several years of research...
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Genome-wide association studies reveal novel loci for resistance to groundnut rosette disease in the African core groundnut collection
Key messageWe identified markers associated with GRD resistance after screening an Africa-wide core collection across three seasons in Uganda
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Family-Free Genome Comparison
The comparison of large-scale genome structures across distinct species offers valuable insights into the species’ phylogeny, genome organization,...
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Crucifer’s Pathogens Genome
The information on genome sequences, analysis and assembly of limited pathogens of crucifers has been generated and made available. It has given...
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Technologies Promoting Genome-Based Taxonomy
Whole-genome sequencing (WGS) has proven to be a reliable method. Additionally, it is a commonly used approach in research and surveillance...
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RAD21 is the core subunit of the cohesin complex involved in directing genome organization
BackgroundThe ring-shaped cohesin complex is an important factor for the formation of chromatin loops and topologically associating domains (TADs) by...
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Genome-wide identification and characterization of polycomb repressive complex 2 core components in upland cotton (Gossypium hirsutum L.)
BackgroundThe evolutionarily conserved Polycomb Repressive Complex 2 (PRC2) plays a vital role in epigenetic gene repression by depositing...
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Application of TraDIS to define the core essential genome of Campylobacter jejuni and Campylobacter coli
Campylobacter species are the major cause of bacterial gastroenteritis. As there is no effective vaccine, combined with the rapid increase in...
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CoRe: a robustly benchmarked R package for identifying core-fitness genes in genome-wide pooled CRISPR-Cas9 screens
BackgroundCRISPR-Cas9 genome-wide screens are being increasingly performed, allowing systematic explorations of cancer dependencies at unprecedented...
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Step-by-Step Bacterial Genome Comparison
Thanks to advancements in genome sequencing and bioinformatics, thousands of bacterial genome sequences are available in public databases. This...
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Genome evolution: Lessons from Genolevures
In the past years, yeast genome-sequencing programs have been widely developed. Two of them, namely Genolevures I and II, were devoted to the...