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CEGA: a method for inferring natural selection by comparative population genomic analysis across species
We developed maximum likelihood method for detecting positive selection or balancing selection using multilocus or genomic polymorphism and...
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Comparative Genome Annotation
Newly sequenced genomes are being added to the tree of life at an unprecedented fast pace. A large proportion of such new genomes are...
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Comparative RNA Genomics
Over the last quarter of a century it has become clear that RNA is much more than just a boring intermediate in protein expression. Ancient RNAs...
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Comparative Analyses of Bacteriophage Genomes
Bacterial viruses (bacteriophages or phages) are the most abundant and diverse biological entities on Earth. There is a renewed worldwide interest in...
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A new method of calculating crown projection area and its comparative accuracy with conventional calculations for asymmetric tree crowns
This paper introduces a new method of calculating crown projection area ( CPA ), the area of level ground covered by a vertical projection of a tree...
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Comparative Evolutionary Genomics in Insects
Genome sequencing quality, in terms of both read length and accuracy, is constantly improving. By combining long-read sequencing technologies with...
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Comparative genomics and gene finding in fungi
In the spring of 2005, we had access to 18 fully sequenced fungal genomes, and more are coming rapidly. New approaches and methods are being...
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Comparative analysis of animal lifespan
Comparative studies of aging are a promising approach to identifying general properties of and processes leading to aging. While to date, many...
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A comparative analysis of computational drug repurposing approaches: proposing a novel tensor-matrix-tensor factorization method
Efficient drug discovery relies on drug repurposing, an important and open research field. This work presents a novel factorization method and a...
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Schizosaccharomyces pombe comparative genomics; from sequence to systems
The fission yeast Schizosaccharomyces pombe is becoming increasingly important as a model for the characterization and study of many globally...
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A Comparative Methodology Re(de)fined: Place or Space
This chapter provides a revised comparative methodology for studying islands as ecoterritories and their promotion of sport tourism as a vehicle for...
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Comparative Probiogenomics Analysis of Limosilactobacillus fermentum 3872
Limosilactobacillus fermentum is an important member of the lactic acid bacteria group and holds immense potential for probiotic properties in human...
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COSAP: Comparative Sequencing Analysis Platform
BackgroundRecent improvements in sequencing technologies enabled detailed profiling of genomic features. These technologies mostly rely on short...
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Comparative Methods for Demystifying Spatial Transcriptomics
Spatial Transcriptomics (ST), coined as the term for parallel RNA-Seq on cell populations ordered spatially on a histological tissue section, has...
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Bioinformatic Approaches for Comparative Analysis of Viruses
The field of viral genomic studies has experienced an unprecedented increase in data volume. New strains of known viruses are constantly being added...
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Genome-scale identification and comparative analysis of transcription factors in thermophilic cyanobacteria
BackgroundThe transcription factors (TFs) in thermophilic cyanobacteria might represent a uniquely evolved gene repertoire in light of the strong...
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Comparative Genomics of Actinobacteria
The class Actinobacteria contains many bacteria relevant to human health and industry; it includes both the most deadly pathogen and also organisms...
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Definitions of Free and Bound Water in Plants and a Comparative Analysis of the Drying Method over a Dewatering Agent and Differential Scanning Calorimetry
AbstractThe article presents the results of a comparative study of two drying methods: over a dehydrating medium and differential scanning...
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Comparative transcriptomics analysis pipeline for the meta-analysis of phylogenetically divergent datasets (CoRMAP)
BackgroundTranscriptional regulation is a fundamental mechanism underlying biological functions. In recent years, a broad array of RNA-Seq tools have...
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Comparative analysis of cell–cell communication at single-cell resolution
Inference of cell–cell communication from single-cell RNA sequencing data is a powerful technique to uncover intercellular communication pathways,...
