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The pan-genome of Mycobacterium avium subsp. paratuberculosis (Map) confirms ancestral lineage and reveals gene rearrangements within Map Type S
BackgroundTo date genomic studies on Map have concentrated on Type C strains with only a few Type S strains included for comparison. In this study...
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Comparative Genome Annotation
Newly sequenced genomes are being added to the tree of life at an unprecedented fast pace. A large proportion of such new genomes are...
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High-density linkage map and QTL map for yield and yield components of sorghum recombinant inbreed lines developed from Gambella × Sorcoll 163/07 using GBS
Sorghum ( Sorghum bicolor (L.) Moench), a cereal of economic importance, ensures food and fodder security for millions of rural families in the...
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Combining GWAS and comparative genomics to fine map candidate genes for days to flowering in mung bean
BackgroundMung bean ( Vigna radiata (L.) Wilczek), is an important pulse crop in the global south. Early flowering and maturation are advantageous...
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Comparative RNA Genomics
Over the last quarter of a century it has become clear that RNA is much more than just a boring intermediate in protein expression. Ancient RNAs...
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Comparative Evolutionary Genomics in Insects
Genome sequencing quality, in terms of both read length and accuracy, is constantly improving. By combining long-read sequencing technologies with...
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A spatial transcriptome map of the develo** maize ear
A comprehensive understanding of inflorescence development is crucial for crop genetic improvement, as inflorescence meristems give rise to...
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Freeprotmap: waiting-free prediction method for protein distance map
BackgroundProtein residue–residue distance maps are used for remote homology detection, protein information estimation, and protein structure...
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Comparative genomics and gene finding in fungi
In the spring of 2005, we had access to 18 fully sequenced fungal genomes, and more are coming rapidly. New approaches and methods are being...
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Schizosaccharomyces pombe comparative genomics; from sequence to systems
The fission yeast Schizosaccharomyces pombe is becoming increasingly important as a model for the characterization and study of many globally...
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A Wheat 660 K SNP array-based high-density genetic map facilitates QTL map** of flag leaf-related traits in wheat
Key messageA high-density genetic map containing 122,620 SNP markers was constructed, which facilitated the identification of eight major flag...
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Single-cell map of dynamic cellular microenvironment of radiation-induced intestinal injury
Intestine is a highly radiation-sensitive organ that could be injured during the radiotherapy for pelvic, abdominal, and retroperitoneal tumors....
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Comparative Probiogenomics Analysis of Limosilactobacillus fermentum 3872
Limosilactobacillus fermentum is an important member of the lactic acid bacteria group and holds immense potential for probiotic properties in human...
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Comparative chloroplast genome analysis of six millet species along with related Poaceae family members
Millets considered as storehouse of nutrients, are C4 plants that offer a more reliable yield than other crops in low-rainfall regions. Within the...
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A genetic linkage map and improved genome assembly of the termite symbiont Termitomyces cryptogamus
BackgroundThe termite-fungus symbiosis is an ancient stable mutualism of two partners that reproduce and disperse independently. With the founding of...
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Investigate large gaps and improve genetic map in narrow-leafed lupin (Lupinus angustifolius L.)
Genetic map is of vital importance to plant molecular genetic studies. It has been used for QTL map**, gene cloning, and physical map construction....
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Bioinformatic Approaches for Comparative Analysis of Viruses
The field of viral genomic studies has experienced an unprecedented increase in data volume. New strains of known viruses are constantly being added...
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Comparative Methods for Demystifying Spatial Transcriptomics
Spatial Transcriptomics (ST), coined as the term for parallel RNA-Seq on cell populations ordered spatially on a histological tissue section, has...
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ROCK2-RNA interaction map reveals multiple biological mechanisms underlying tumor progression in renal cell carcinoma
Renal cell carcinoma (RCC) is the most common form of kidney cancer in adults. Despite new therapeutic modalities, the outcomes for RCC patients...
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A spatiotemporal proteomic map of human adipogenesis
White adipocytes function as major energy reservoirs in humans by storing substantial amounts of triglycerides, and their dysfunction is associated...
