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  1. Feature-specific quantile normalization and feature-specific mean–variance normalization deliver robust bi-directional classification and feature selection performance between microarray and RNAseq data

    Background

    Cross-platform normalization seeks to minimize technological bias between microarray and RNAseq whole-transcriptome data. Incorporating...

    Daniel Skubleny, Sunita Ghosh, ... Gina R. Rayat in BMC Bioinformatics
    Article Open access 29 March 2024
  2. CircRNA identification and feature interpretability analysis

    Background

    Circular RNAs (circRNAs) can regulate microRNA activity and are related to various diseases, such as cancer. Functional research on...

    Mengting Niu, Chunyu Wang, ... Lei Xu in BMC Biology
    Article Open access 27 February 2024
  3. LncRNA–protein interaction prediction with reweighted feature selection

    LncRNA–protein interactions are ubiquitous in organisms and play a crucial role in a variety of biological processes and complex diseases. Many...

    Guohao Lv, Yingchun **a, ... Lichuan Gu in BMC Bioinformatics
    Article Open access 30 October 2023
  4. iDHS-FFLG: Identifying DNase I Hypersensitive Sites by Feature Fusion and Local–Global Feature Extraction Network

    The DNase I hypersensitive sites (DHSs) are active regions on chromatin that have been found to be highly sensitive to DNase I. These regions contain...

    Article 27 September 2022
  5. A neural network model to screen feature genes for pancreatic cancer

    All the time, pancreatic cancer is a problem worldwide because of its high degree of malignancy and increased mortality. Neural network model...

    **g Huang, Yuting Zhou, ... Yiming Wu in BMC Bioinformatics
    Article Open access 11 May 2023
  6. Fractal feature selection model for enhancing high-dimensional biological problems

    The integration of biology, computer science, and statistics has given rise to the interdisciplinary field of bioinformatics, which aims to decode...

    Ali Hakem Alsaeedi, Haider Hameed R. Al-Mahmood, ... Khandakar Ahmed in BMC Bioinformatics
    Article Open access 09 January 2024
  7. Feature selection for effective prediction of SARS-COV-2 using machine learning

    Background

    With rise in variants of SARS-CoV-2, it is necessary to classify the emerging SARS-CoV-2 for early detection and thereby reduce human...

    Gagan Punacha, Rama Adiga in Genes & Genomics
    Article 20 November 2023
  8. Attention-based dual-path feature fusion network for automatic skin lesion segmentation

    Automatic segmentation of skin lesions is a critical step in Computer Aided Diagnosis (CAD) of melanoma. However, due to the blurring of the lesion...

    Zhenxiang He, **aoxia Li, ... Yong Cai in BioData Mining
    Article Open access 09 October 2023
  9. scFED: Clustering Identifying Cell Types of scRNA-Seq Data Based on Feature Engineering Denoising

    Recently developed single-cell RNA-seq (scRNA-seq) technology has given researchers the chance to investigate single-cell level of disease...

    Yang Liu, Feng Li, ... Daohui Ge in Interdisciplinary Sciences: Computational Life Sciences
    Article 04 July 2023
  10. Identification of important gene signatures in schizophrenia through feature fusion and genetic algorithm

    Schizophrenia is a debilitating psychiatric disorder that can significantly affect a patient’s quality of life and lead to permanent brain damage....

    Zhixiong Chen, Ruiquan Ge, ... **aopeng Fan in Mammalian Genome
    Article 21 March 2024
  11. Genetic algorithm-based feature selection with manifold learning for cancer classification using microarray data

    Background

    Microarray data have been widely utilized for cancer classification. The main characteristic of microarray data is “large p and small n” in...

    Zixuan Wang, Yi Zhou, ... Tetsuo Shibuya in BMC Bioinformatics
    Article Open access 08 April 2023
  12. MFSynDCP: multi-source feature collaborative interactive learning for drug combination synergy prediction

    Drug combination therapy is generally more effective than monotherapy in the field of cancer treatment. However, screening for effective synergistic...

    Yunyun Dong, Yunqing Chang, ... **aoqiang Ren in BMC Bioinformatics
    Article Open access 01 April 2024
  13. Dual Attention Mechanisms and Feature Fusion Networks Based Method for Predicting LncRNA-Disease Associations

    LncRNAs play a part in numerous momentous processes of biology such as disease diagnoses, preventions and treatments. The associations between...

    Yu Liu, Yingying Yu, Shimin Zhao in Interdisciplinary Sciences: Computational Life Sciences
    Article 24 January 2022
  14. Investigating the neurocognitive background of speech perception with a fast multi-feature MMN paradigm

    The speech multi-feature MMN (Mismatch Negativity) offers a means to explore the neurocognitive background of the processing of multiple speech...

    Ferenc Honbolygó, Borbála Zulauf, ... Valéria Csépe in Biologia Futura
    Article Open access 01 March 2024
  15. Rapid identification of medicinal plants via visual feature-based deep learning

    Background

    Traditional Chinese Medicinal Plants (CMPs) hold a significant and core status for the healthcare system and cultural heritage in China. It...

    Chaoqun Tan, Long Tian, ... Ke Li in Plant Methods
    Article Open access 31 May 2024
  16. Essential genes identification model based on sequence feature map and graph convolutional neural network

    Background

    Essential genes encode functions that play a vital role in the life activities of organisms, encompassing growth, development, immune...

    Wenxing Hu, Mengshan Li, ... Lixin Guan in BMC Genomics
    Article Open access 10 January 2024
  17. A statistical framework for high-content phenotypic profiling using cellular feature distributions

    High-content screening (HCS) uses microscopy images to generate phenotypic profiles of cell morphological data in high-dimensional feature space....

    Yanthe E. Pearson, Stephan Kremb, ... Kristin C. Gunsalus in Communications Biology
    Article Open access 22 December 2022
  18. Biomarker detection using corrected degree of domesticity in hybrid social network feature selection for improving classifier performance

    Background

    Dimension reduction, especially feature selection, is an important step in improving classification performance for high-dimensional data....

    Hatice Yağmur Zengin, Erdem Karabulut in BMC Bioinformatics
    Article Open access 30 October 2023
  19. Benchmark study of feature selection strategies for multi-omics data

    Background

    In the last few years, multi-omics data, that is, datasets containing different types of high-dimensional molecular variables for the same...

    Yingxia Li, Ulrich Mansmann, ... Roman Hornung in BMC Bioinformatics
    Article Open access 05 October 2022
  20. Aspect-based sentiment analysis for fish diseases using a feature interaction model based on adversarial strategy

    Aspect-based sentiment analysis has achieved many results in recent years, but most of the research focuses on goods, services, and topics. The...

    Zihan Cong, Sijia Zhang, Jie Wu in Aquaculture International
    Article 27 April 2024
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