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1. An analysis of entity normalization evaluation biases in specialized domains

   Background

   Entity normalization is an important information extraction task which has recently gained attention, particularly in the...

   Arnaud Ferré, Philippe Langlais in BMC Bioinformatics

   Article Open access 02 June 2023
   

2. SIFR annotator: ontology-based semantic annotation of French biomedical text and clinical notes

   Background

   Despite a wide adoption of English in science, a significant amount of biomedical data are produced in other languages, such as French. Yet...

   Andon Tchechmedjiev, Amine Abdaoui, ... Clement Jonquet in BMC Bioinformatics

   Article Open access 06 November 2018
   

3. Analyzing transfer learning impact in biomedical cross-lingual named entity recognition and normalization

   Background

   The volume of biomedical literature and clinical data is growing at an exponential rate. Therefore, efficient access to data described in...

   Renzo M. Rivera-Zavala, Paloma Martínez in BMC Bioinformatics

   Article Open access 17 December 2021
   

4. Linking entities through an ontology using word embeddings and syntactic re-ranking

   Background

   Although there is an enormous number of textual resources in the biomedical domain, currently, manually curated resources cover only a...

   İlknur Karadeniz, Arzucan Özgür in BMC Bioinformatics

   Article Open access 27 March 2019
   

5. CNN-based ranking for biomedical entity normalization

   Background

   Most state-of-the-art biomedical entity normalization systems, such as rule-based systems, merely rely on morphological information of...

   Haodi Li, Qingcai Chen, ... Dong Huang in BMC Bioinformatics

   Article Open access 03 October 2017