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  1. Impact of photon flux density and light spectral quality on biomass production and arbutin compound accumulation in Origanum majorana L. plantlets

    Light is one of the factors that influence the growth, development and synthesis of secondary metabolites of different plant species in vitro. Origanum...

    Melvis Celeste Vilanculos Cossa, João Pedro Miranda Rocha, ... José Eduardo Brasil Pereira Pinto in Plant Cell, Tissue and Organ Culture (PCTOC)
    Article 11 December 2023
  2. Fluxomics and Metabolic Flux Analysis

    Fluxomics and metabolic flux analysis (MFA) are cutting-edge experimental techniques in a biological system focuses on quantifying the flux of...
    Manoj Kumar Mishra, Ajay Kumar in Multi-Omics Analysis of the Human Microbiome
    Chapter 2024
  3. ‘Social’ versus ‘asocial’ cells—dynamic competition flux balance analysis

    In multicellular organisms cells compete for resources or growth factors. If any one cell type wins, the co-existence of diverse cell types...

    Yanhua Liu, Hans V. Westerhoff in npj Systems Biology and Applications
    Article Open access 28 October 2023
  4. Flux sampling in genome-scale metabolic modeling of microbial communities

    Background

    Microbial communities play a crucial role in ecosystem function through metabolic interactions. Genome-scale modeling is a promising method...

    Patrick E. Gelbach, Handan Cetin, Stacey D. Finley in BMC Bioinformatics
    Article Open access 29 January 2024
  5. Mechanisms of metabolic adaptation in the duckweed Lemna gibba: an integrated metabolic, transcriptomic and flux analysis

    Background

    Duckweeds are small, rapidly growing aquatic flowering plants. Due to their ability for biomass production at high rates they represent...

    Hai Shi, Evan Ernst, ... Jorg Schwender in BMC Plant Biology
    Article Open access 03 October 2023
  6. Linear relationship between CH4 fluxes and atmospheric CO2 concentration levels controlled by rice biomass and soil methanogenic communities

    The contribution of CH 4 emissions from paddy soils to greenhouse gas emissions is key in the evaluation of future climate change scenarios. Most...

    Yuanyuan Wang, Zhenghua Hu, ... Ye Sun in Nutrient Cycling in Agroecosystems
    Article 25 July 2023
  7. Selecting a preculture strategy for improving biomass and astaxanthin productivity of Chromochloris zofingiensis

    Abstract

    Chromochloris zofingiensis is a potential source of natural astaxanthin; however, its rapid growth and astaxanthin enrichment cannot be...

    Yuxin Wang, Jia Wang, ... Han Sun in Applied Microbiology and Biotechnology
    Article Open access 10 January 2024
  8. The Influence of Wavelengths of Different Ranges of Photosynthetically Active Radiation on the Carbon Isotope Composition of Plant Biomass and Its Fractions (Using the Lettuce (Lactuca sativa L.) Cultivar Aficion as an Example)

    Abstract

    The influence of incident wavelengths of four ranges—short-wave red (623–641 nm), long-wave red (646–667 nm), far red (727–751 nm), and blue...

    A. A. Ivlev, D. A. Tovstyko, ... I. G. Tarakanov in Biology Bulletin
    Article 25 September 2023
  9. Predicting microbial interactions with approaches based on flux balance analysis: an evaluation

    Background

    Given a genome-scale metabolic model (GEM) of a microorganism and criteria for optimization, flux balance analysis (FBA) predicts the...

    Clémence Joseph, Haris Zafeiropoulos, ... Karoline Faust in BMC Bioinformatics
    Article Open access 23 January 2024
  10. Integration of Metabolomics and Flux Balance Analysis: Applications and Challenges

    This book chapter presents an in-depth analysis of the integration of metabolomics and flux balance analysis (FBA) as powerful tools for...
    Gholamreza Abdi, Nil Patil, ... Mukul Barwant in Advances in Bioinformatics
    Chapter 2024
  11. Organic soil greenhouse gas flux rates in hemiboreal old-growth Scots pine forests at different groundwater levels

    Tree biomass and soils (especially organic soils) are significant carbon pools in forest ecosystems, therefore forest management practices, in order...

    Valters Samariks, Laura Ķēniņa, ... Āris Jansons in European Journal of Forest Research
    Article Open access 25 April 2024
  12. Metabolic flux analysis: A key methodology for systems biology of metabolism

    Genome-wide analyses of mRNA, protein, or metabolite complements of biological systems produce unprecedented data sets. In contrast to such cellular...
    Uwe Sauer in Systems Biology
    Chapter
  13. Combining denoising of RNA-seq data and flux balance analysis for cluster analysis of single cells

    Background

    Sophisticated methods to properly pre-process and analyze the increasing collection of single-cell RNA sequencing (scRNA-seq) data are...

    Bruno G. Galuzzi, Marco Vanoni, Chiara Damiani in BMC Bioinformatics
    Article Open access 25 October 2022
  14. Carbon Stocks and Total Belowground Carbon Flux Respond to Weather and Grazing in Semiarid Montane Meadows

    Montane meadow ecosystems are regional carbon (C) hot spots relative to surrounding uplands and can be substantial C sinks or sources. In the...

    Brian M. Morra, Will C. Richardson, ... Benjamin W. Sullivan in Ecosystems
    Article 24 April 2023
  15. Large-diameter trees buffer monsoonal changes to tree biomass over two decades

    Forest carbon storage inherently depends on the frequency and severity of characteristic disturbances and long-term changes in climate. The tropical...

    Chen-Chia Ku, Jianwu Tang, ... James A. Lutz in Plant Ecology
    Article 25 October 2023
  16. Physiological Traits and Biomass Production of Two Euterpe Species under Drought Stress

    Abstract

    Our aim here was to evaluate the effects of drought stress on plant growth rate, biomass production, and physiological traits of endemic Euterpe...

    M. O. Martins, T. Souza, ... L. J. R. da Silva in Russian Journal of Plant Physiology
    Article 22 June 2023
  17. Influence of Culture Conditions on the Microalgal Biomass and Lipid Accumulation

    In the current situation, almost every industrial and transportation activities are dependent on fossil fuels for their energy requirements. Fossil...
    Chapter 2023
  18. Ectopic callose deposition into woody biomass modulates the nano-architecture of macrofibrils

    Plant biomass plays an increasingly important role in the circular bioeconomy, replacing non-renewable fossil resources. Genetic engineering of this...

    Matthieu Bourdon, Jan J. Lyczakowski, ... Ykä Helariutta in Nature Plants
    Article Open access 04 September 2023
  19. Multi-year mesozooplankton flux trends in Kongsfjorden, Svalbard

    We conducted this study to investigate the relationship between environmental stressors and mesozooplankton fluxes in inner Kongsfjorden, Svalbard....

    Alessandra D’Angelo, Kyle Mayers, ... Leonardo Langone in Polar Biology
    Article Open access 29 April 2024
  20. Influence of a static magnetic field on the photosynthetic apparatus, cell division, and biomass composition of a Chlorella microalgae-bacteria consortium

    The main objective of this research was to evaluate the effect of a 47 mT static magnetic field (SMF) applied at different times of the exponential...

    Yadira Silveira Font, Yadenis Ortega Díaz, ... Dries Vandamme in Journal of Applied Phycology
    Article 07 December 2023
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