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Generating 2D Barcode for DNA Barcode Sequences
DNA barcode sequence is a short DNA sequence representing a sample from a particular species. The commonly used DNA barcodes are at least 200 bps...
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Principles for Constructing DNA Barcode Reference Libraries
All DNA barcode methods rely on reference sequences linked to well-curated voucher specimens. Definitions for and locations of DNA barcode reference...
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Mfind: a tool for DNA barcode analysis in angiosperms and its relationship with microsatellites using a sliding window algorithm
Main conclusionMfind is a tool to analyze the impact of microsatellite presence on DNA barcode specificity. We found a significant correlation...
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Rust HUBB: DNA barcode-based identification of Pucciniales
Rust fungi (Pucciniales, Basidiomycota) are a species-rich (ca. 8000 species), globally distributed order of obligate plant pathogens. Rust species...
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Using a DNA mini-barcode within the ITS region to identify toxic Amanita in mushroom poisoning cases
AbstractMushroom poisoning contributes significantly to global foodborne diseases and related fatalities. Amanita mushrooms frequently cause such...
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iTaxoTools 1.0: Improved DNA Barcode Exploration with TaxI2
The overall availability of user-friendly software tools tailored to the analysis of DNA barcodes is limited. Several obvious functions such as...
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Exploring DNA barcode for accurate identification of threatened Aconitum L. species from Western Himalaya
BackgroundAconitum species, belonging to Ranunculaceae, have high medicinal importance but due to their overexploitation come under IUCN...
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Multiplexed transcriptome discovery of RNA-binding protein binding sites by antibody-barcode eCLIP
Ultraviolet crosslinking and immunoprecipitation (CLIP) methodologies enable the identification of RNA binding sites of RNA-binding proteins (RBPs)....
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A Measure of the DNA Barcode Gap for Applied and Basic Research
DNA barcoding has largely established itself as a mainstay for rapid molecular taxonomic identification in both academic and applied research. The...
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DNA barcode-based survey documents underestimated diversity and intricate phylogeographic patterns of aquatic Heteroptera in an endangered Balkan biodiversity hotspot: ancient Lake Skadar basin
Lake Skadar with its surrounding springs, wetlands and larger affluents is among the most diverse freshwater ecosystems in the Mediterranean region...
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New record of two thrips species (Thysanoptera: Terebrantia: Thripidae) from India along with redescription, host association and DNA barcode of Euphysothrips minozzii Bagnall
Two species of thrips, Rhipiphorothrips concoloratus Zhang and Tong and Trichromothrips antidesmae Li, Li and Zhang, under the family Thripidae are...
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MTG-Link: leveraging barcode information from linked-reads to assemble specific loci
BackgroundLocal assembly with short and long reads has proven to be very useful in many applications: reconstruction of the sequence of a locus of...
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Polyphenolics, antioxidant characterization and DNA barcoding of Kala zeera [Bunium persicum (Boiss.) Fedtsch] through multiple barcode analysis to unravel best barcode combination
BackgroundKala zeera [ Bunium persicum (Boiss.) Fedtsch] is one of the important spice crops of North Western Himalayas with lot of medicinal and...
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A molecular barcode and web-based data analysis tool to identify imported Plasmodium vivax malaria
Traditionally, patient travel history has been used to distinguish imported from autochthonous malaria cases, but the dormant liver stages of Plasmodiu...
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Exitianus atratus (Hemiptera: Cicadellidae) a vector of phytoplasmas: morphometry, DNA barcode and phylogenetic relationships for nymphs and adults from Colombia
Integrative taxonomy involving morphometry and molecular analysis is fundamental for the delimitation of taxonomic identity and for the association...
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Stethorini (Coleoptera: Coccinellidae: Coccinellinae) of South India: their associated mite species and barcode gap analysis
BackgroundStethorini are specialized mite predators in the family Coccinellidae, which are small with black body and brown or yellow colored...
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DNA Barcode-Based Species Diagnosis with MolD
Rapid biodiversity loss sets new requirements for taxonomic research, prompting updating some long-established practices to maximize timely...
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Establishing community-wide DNA barcode references for conserving mangrove forests in China
BackgroundMangrove ecosystems have been the focus of global attention for their crucial role in sheltering coastal communities and retarding global...
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DNA Barcode is Efficient for Identifying Bat Species
Chiroptera stands out for the richness of species and a variety of unique characteristics. However, the morphological similarities in some taxa of...
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Identification of Laportea bulbifera using the complete chloroplast genome as a potentially effective super-barcode
Laportea bulbifera , a Miao medicine grown in karst areas, has exerted a unique curative effect on skin itching in the elderly, with an annual sales...
