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Genomics-based identification of a cold adapted clade in Deinococcus
BackgroundMicrobes in the cold polar and alpine environments play a critical role in feedbacks that amplify the effects of climate change. Defining...
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Protein Repeats Show Clade-Specific Volatility in Aves
AbstractProtein repeats are a source of rapid evolutionary and functional novelty. Repeats are crucial in development, neurogenesis, immunity, and...
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QTL map** of resistance to Pseudoperonospora cubensis clade 2, mating type A1, in Cucumis melo and dual-clade marker development
Key messageThis is the first identification of QTLs underlying resistance in Cucumis melo to an isolate of Pseudoperonospora cubensis identified as...
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Chloroplast genome characteristics and phylogeny of the sinodielsia clade (apiaceae: apioideae)
BackgroundThe Sinodielsia clade of the subfamily Apioideae (Apiacieae) was established in 2008, and it is composed of 37 species from 17 genera. Its...
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A chromosome-level genome for the nudibranch gastropod Berghia stephanieae helps parse clade-specific gene expression in novel and conserved phenotypes
BackgroundHow novel phenotypes originate from conserved genes, processes, and tissues remains a major question in biology. Research that sets out to...
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Canonical ammonia oxidizers and comammox Clade A play active roles in nitrification in a black soil at different pH and ammonium concentrations
The discovery of complete ammonia oxidizers (comammox) challenged our cognition of the nitrification process. Ammonia oxidizing archaea (AOA),...
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Comparative genomics and genomic diversity of Pseudomonas syringae clade 2b-a in Australia
BackgroundA zucchini disease outbreak with unusual symptoms associated with Pseudomonas syringae clade 2b was identified in Bundaberg, Australia...
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Taxonomic characterisation of the Regianum clade (genus Tuber) and the trait evolution of spore size among true truffles
The genus Tuber comprises ectomycorrhizal fungal species producing belowground ascomata, including the gastronomically most prominent hypogeous...
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Plastid phylogenomics and fossil evidence provide new insights into the evolutionary complexity of the ‘woody clade’ in Saxifragales
BackgroundThe “woody clade” in Saxifragales (WCS), encompassing four woody families (Altingiaceae, Cercidiphyllaceae, Daphniphyllaceae, and...
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Escherichia cryptic clade I is an emerging source of human intestinal pathogens
BackgroundWithin the genus Escherichia , several monophyletic clades other than the traditionally defined species have been identified. Of these,...
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Species delimitation and coexistence in an ancient, depauperate vertebrate clade
BackgroundA major challenge to understanding how biodiversity has changed over time comes from depauperons, which are long-lived lineages with...
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Affinity Purification of Ubiquitinated Proteins Using p62-Agarose to Assess Ubiquitination of Clade A PP2Cs
Certain E3 ubiquitin ligases play a key role in the abscisic acid (ABA) pathway by targeting clade A type 2C protein phosphatases (PP2Cs) for...
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Dollo-CDP: a polynomial-time algorithm for the clade-constrained large Dollo parsimony problem
The last decade of phylogenetics has seen the development of many methods that leverage constraints plus dynamic programming. The goal of this...
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Genomic analyses reveal a low-temperature adapted clade in Halorubrum, a widespread haloarchaeon across global hypersaline environments
BackgroundCold-adapted archaea have diverse ecological roles in a wide range of low-temperature environments. Improving our knowledge of the genomic...
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Replicated radiation of a plant clade along a cloud forest archipelago
Replicated radiations, in which sets of similar forms evolve repeatedly within different regions, can provide powerful insights into parallel...
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Vascular function of the T3/modern clade WUSCHEL-Related HOMEOBOX transcription factor genes predate apical meristem-maintenance function
BackgroundPlants have the lifelong ability to generate new organs due to the persistent functioning of stem cells. In seed plants, groups of stem...
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The chloroplast genome of Farsetia hamiltonii Royle, phylogenetic analysis, and comparative study with other members of Clade C of Brassicaceae
BackgroundFarsetia hamiltonii Royle is a medicinally important annual plant from the Cholistan desert that belongs to the tribe Anastaticeae and...
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A clade of telosma mosaic virus from Thailand is undergoing geographical expansion and genetic differentiation in passionfruit of Vietnam and China
Passionfruit ( Passiflora edulis ) is widely cultivated in tropical and subtropical regions around the world. Several viruses of the genus Potyvirus ...
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Ontogenetic drivers of morphological evolution in monitor lizards and allies (Squamata: Paleoanguimorpha), a clade with extreme body size disparity
BackgroundHeterochrony, change in the rate or timing of development, is thought to be one of the main drivers of morphological evolution, and...
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Long-read PacBio genome sequencing of four environmental saprophytic Sporothrix species spanning the pathogenic clade
BackgroundThe genus Sporothrix belongs to the order Ophiostomatales and contains mainly saprobic soil and plant fungi, although pathogenic species...
