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FFP: joint Fast Fourier transform and fractal dimension in amino acid property-aware phylogenetic analysis
BackgroundAmino acid property-aware phylogenetic analysis (APPA) refers to the phylogenetic analysis method based on amino acid property encoding,...
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Clustered surface amino acid residues modulate the acid stability of GH10 xylanase in fungi
AbstractAcidic xylanases are widely used in industries such as biofuels, animal feeding, and fruit juice clarification due to their tolerance to...
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Amino acid residue at position 188 determines the UV-sensitive bistable property of vertebrate non-visual opsin Opn5
Opsins are G protein-coupled receptors specialized for photoreception in animals. Opn5 is categorized in an independent opsin group and functions for...
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C60 Fullerene Amino Acid Derivatives: Synthesis and Biomedical Applications (A Review)
AbstractWater-soluble forms of fullerene C 60 possess unique physicochemical and biological properties, making them promising candidates for the...
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Genetic dissection reveals the complex architecture of amino acid composition in soybean seeds
Key messageFive loci related to soybean protein and amino acid contents were colocated by performing linkage map** and GWAS. The haplotype analysis...
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Extensive studies on physiochemical properties, purification strategies, application of microbial l-amino acid oxidase
l -Amino acid oxidase (LAAO) as flavoenzymes catalyzes the stereospecific oxidative deamination of l -amino acids to α-keto acid along with the...
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Convex Hull Principle and Distinguishing Proteins from Arbitrary Amino Acid Sequences
In every natural science field, it is important to discover the laws that govern it. In chemistry, there are three laws: the Law of Mass...
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Gamma Amino Butyric Acid (GABA) and Ferulic Acid Esterase (FAE) Producing Psychobiotic Bacteria Isolated from Cereal-Based Fermented Food
Gut microbiota plays an important role in regulating enteric, immune and neural pathways. Many neuropsychiatric disorders such as anxiety,...
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Metabuli: sensitive and specific metagenomic classification via joint analysis of amino acid and DNA
Metagenomic taxonomic classifiers analyze either DNA or amino acid (AA) sequences. Metabuli ( https://metabuli.steineggerlab.com ), however, jointly...
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Aromatic L-amino acid decarboxylases: mechanistic features and microbial applications
AbstractAromatic L-amino acid decarboxylases (AADCs) catalyze the conversion of aromatic L-amino acids into aromatic monoamines that play diverse...
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Protein characteristics, amino acid profile, health benefits and methods of extraction and isolation of proteins from some pseudocereals—a review
Pseudocereals are the seeds or fruits of non-grass species that can be consumed similarly to cereals. Most commonly used pseudocereals are amaranth,...
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Amino Acids Transport as an Index of Cancer Stem Cells Dysregulation
The appearance, proliferation, metastasis, and even resistance to chemotherapy depend on the molecular identity of the so-called Cancer Stem Cells...
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Cobra (Naja naja) venom L-amino acid oxidase (NNLAAO70) induces apoptosis and secondary necrosis in human lung epithelial cancer cells
Snake venom L-amino acid oxidases (LAAOs) are flavoenzymes with diverse physiological and pharmacological effects. These enzymes are found to...
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Determinants of associations between codon and amino acid usage patterns of microbial communities and the environment inferred based on a cross-biome metagenomic analysis
Codon and amino acid usage were associated with almost every aspect of microbial life. However, how the environment may impact the codon and amino...
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The organic manure-improved yield and quality in strawberries is attributed to metabolic reprogramming to increase amino acids, sugar/acid ratio, flavonoids and phenolic volatiles
Background and aimsApplication of organic manure improves strawberry yield, but the underlying physiological and molecular mechanisms remain largely...
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Biomarkers for ideal protein: rabbit diet metabolomics varying key amino acids
With the main aim of identifying biomarkers that contribute to defining the concept of ideal protein in growing rabbits under the most diverse...
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Sperm chromatin structure and reproductive fitness are altered by substitution of a single amino acid in mouse protamine 1
Conventional dogma presumes that protamine-mediated DNA compaction in sperm is achieved by electrostatic interactions between DNA and the...
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Amino Acid Function and Requirement—‘More than Easy Fuel’
Conventionally, amino acids (AAs) are classified as essential AAs (EAAs) and nonessential AAs (NEAAs), although evidence is accumulating that NEAAs...
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Estimating the Influence of Physicochemical and Biochemical Property Indexes on Selection for Amino Acids Usage in Eukaryotic Cells
Proteins can evolve by accumulating changes on amino acid sequences. These changes are mainly caused by missense mutations on its DNA coding...
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Amino Acids Transport as an Index of Cancer Stem Cells Dysregulation
The appearance, proliferation, metastasis, and even resistance to chemotherapy depend on the molecular identity of the so-called Cancer Stem Cells...