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Lactiplantibacillus plantarum, lactiplantibacillus pentosus and inulin meal inclusion boost the metagenomic function of broiler chickens
BackgroundThe inclusion of alternative ingredients in poultry feed is foreseen to impact poultry gut microbiota. New feeding strategies...
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Metagenomic analysis reveals wide distribution of phototrophic bacteria in hydrothermal vents on the ultraslow-spreading Southwest Indian Ridge
Deep-sea hydrothermal vents are known as chemosynthetic ecosystems. However, high temperature vents emit light that hypothetically can drive...
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Metagenomic comparison of gut communities between hawksbills (Eretmochelys imbricata) and green sea turtles (Chelonia mydas)
The gut microbiota is closely linked to host nutrition, immunity, and health. Here, metagenomic analysis was conducted to elucidate the taxonomic and...
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Metagenomic Analyses of Bifidobacterial Communities
Bifidobacteria represent highly prevalent and abundant members of the gut microbiota during mammalian infancy. In this context, bifidobacterial...
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Degradation and metagenomic analysis of 4-chlorophenol utilizing multiple metal tolerant bacterial consortium
Chlorophenols are persistent environmental pollutants used in synthesizing dyes, drugs, pesticides, and other industrial products. The chlorophenols...
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Metagenomic and proteomic analysis of bacterial retting community and proteome profile in the degumming process of kenaf bast
BackgroundData on the microbial community and functional proteins associated with degumming in kenaf remains scant. Here, we analyzed the microbial...
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A robust and transformation-free joint model with matching and regularization for metagenomic trajectory and disease onset
BackgroundTo identify operational taxonomy units (OTUs) signaling disease onset in an observational study, a powerful strategy was selecting...
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Evaluation of clinical characteristics and risk factors associated with Chlamydia psittaci infection based on metagenomic next-generation sequencing
IntroductionPsittacosis is a zoonosis caused by Chlamydia psittaci , the clinical manifestations of Psittacosis range from mild illness to fulminant...
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Metagenomic compendium of 189,680 DNA viruses from the human gut microbiome
Bacteriophages have important roles in the ecology of the human gut microbiome but are under-represented in reference databases. To address this...
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Metagenomic analysis reveals the effect of revegetation types on the function of soil microorganisms in carbon and nitrogen metabolism in the open-cast mining area
AimsVegetation type is one of the most important contributing factors to changes in soil properties during the rehabilitation of mining areas....
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Specific pathway abundances in the neonatal calf faecal microbiome are associated with susceptibility to Cryptosporidium parvum infection: a metagenomic analysis
BackgroundCryptosporidium parvum is the main cause of calf scour worldwide. With limited therapeutic options and research compared to other Apicomplexa...
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Metagenomic analysis of individual mosquito viromes reveals the geographical patterns and drivers of viral diversity
Mosquito transmitted viruses are responsible for an increasing burden of human disease. Despite this, little is known about the diversity and ecology...
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Application of Paclobutrazol Altered the Soil Bacterial Diversity and Richness of Mango Orchards: A Metagenomic Study
The soil microbiome regulates plant and soil health by cycling nutrients, reconstructing soil, degrading xenobiotics, and regulating growth....
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Metagenomic Approaches for Insect Symbionts
Insects, the most successful groups in animal kingdom, harbor diverse groups of microbes, such as bacteria, archaea, fungi, protozoa, and viruses,...
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Application of computational approaches to analyze metagenomic data
Microorganisms play a vital role in living systems in numerous ways. In the soil or ocean environment, microbes are involved in diverse processes,...
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Impact of foliar application of fungicides on tomato leaf fungal community structure revealed by metagenomic analysis
Fungicides are commonly used to manage plant pathogens. However, little is known about their effects on the non-target fungal communities that...
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Metagenomic analysis reveals the different characteristics of microbial communities inside and outside the karst tiankeng
BackgroundKarst tiankengs serve as a reservoir of biodiversity in the degraded karst landscape areas. However, the microbial diversity of karst...
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Metagenomic Next-Generation Sequencing Contributes to the Early Diagnosis of Mixed Infections in Central Nervous System
Central nervous system (CNS) infections represent a challenge due to the complexities associated with their diagnosis and treatment, resulting in a...
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Metagenomic data from cerebrospinal fluid permits tracing the origin and spread of Neisseria meningitidis CC4821 in China
Metagenomic next-generation sequencing (mNGS) is useful for difficult to cultivate pathogens. Here, we use cerebrospinal fluid mNGS to diagnose...
