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Genome-wide alternative splicing profile in the posterior kidney of brown trout (Salmo trutta) during proliferative kidney disease
BackgroundThe cnidarian myxozoan parasite Tetracapsuloides bryosalmonae causes chronic proliferative kidney disease (PKD) in salmonids. This...
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Lyso-phosphatidylethanolamine triggers immunity against necrotrophs by promoting JA-signaling and ROS-homeostasis
Modulation of the plant defense response by bioactive molecules is of increasing interest. However, despite plant cell lipids being one of the major...
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The Pineal Transcriptome Webpage
The pineal transcriptome webpage is described, which provides access to the transcript expression profile of the vertebrate pineal gland and, in many...
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Regulation of the parental gene GRM4 by circGrm4 RNA transcript and glutamate-mediated neurovascular toxicity in eyes
AbstractEpigenetic memory plays crucial roles in gene regulation. It not only modulates the expression of specific genes but also has ripple effects...
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Long read isoform sequencing reveals hidden transcriptional complexity between cattle subspecies
The Iso-Seq method of full-length cDNA sequencing is suitable to quantify differentially expressed genes (DEGs), transcripts (DETs) and transcript...
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Association between the APOE gene polymorphism and lipid profile and the risk of atrial fibrillation
BackgroundThe relationship between the APOE gene polymorphism and lipid profiles and atrial fibrillation (AF) remains controversial. The current...
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Proteomic profile of the germinating seeds reveals enhanced seedling growth in Arabidopsis rpp1a mutant
Ribosomal phosphoprotein P1 (RPP1) is an integral component of the P-protein stalk in the 60S subunit of eukaryotic ribosomes and is required for the...
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Single Cell Transcriptome Analysis During Development in Dictyostelium
Dictyostelium represents a stripped-down model for understanding how cells make decisions during development. The complete life cycle takes around a...
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Biosynthetic Profile in the Co-culture of Aspergillus sydowii and Bacillus subtilis to Produce Novel Benzoic Derivatives
Microbial co-culture simulates the natural ecosystem through the combination of artificial microbes. This approach has been widely applied in the...
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Foliar-Applied Selenium Nanoparticles Can Alleviate Soil-Cadmium Stress Through Physio-chemical and Stomatal Changes to Optimize Yield, Antioxidant Capacity, and Fatty Acid Profile of Wheat (Triticum aestivum L.)
Around the world, large areas of agricultural soils are contaminated by cadmium (Cd), and for safe food production, there is a need for...
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Evaluation of some biochemical and biomolecular indicators in rice (Oryza sativa L.) during the seedling stage under NaCl stress
Approximately 900 million hectares of farmland are destroyed by soil salinization, reducing global grain crop yield and quality. Although some...
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Nanopore Direct RNA Sequencing Data Processing and Analysis Using MasterOfPores
This chapter describes MasterOfPores v.2 (MoP2), an open-source suite of pipelines for processing and analyzing direct RNA Oxford Nanopore sequencing...
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The first evidence of biological activity for free Hypusine, an enigmatic amino acid discovered in the '70s
Hypusine amino acid [ N ε -(4-amino-2-hydroxybutyl)-lysine] was first isolated in 1971 from bovine brain extracts. Hypusine originates from a...
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Genome-wide identification of ubiquitin proteasome subunits as superior reference genes for transcript normalization during receptacle development in strawberry cultivars
BackgroundGene transcripts that show invariant abundance during development are ideal as reference genes (RGs) for accurate gene expression analyses,...
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Accurate isoform discovery with IsoQuant using long reads
Annotating newly sequenced genomes and determining alternative isoforms from long-read RNA data are complex and incompletely solved problems. Here we...
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Molecular Mechanisms of Tumorgenesis and Metastasis of Long Non-coding RNA (lncRNA) NEAT1 in Human Solid Tumors; An Update
The expression of the nuclear paraspeckle assembly transcript 1 (NEAT1), as a well-known long non-coding RNA (lncRNA), is often upregulated in varied...
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Analysis of differentially expressed genes discovers Latroeggtoxin VI-induced changes and SYNJ1 as a main target in PC12 cells
BackgroundPrevious preliminary work found that Latroeggtoxin-VI (LETX-VI), a proteinaceous neurotoxin from the eggs of spider Latrodectus...
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Revealing the Arabidopsis AtGRP7 mRNA binding proteome by specific enhanced RNA interactome capture
BackgroundThe interaction of proteins with RNA in the cell is crucial to orchestrate all steps of RNA processing. RNA interactome capture (RIC)...
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SacEXP32 sugarcane expansin gene expression increases cell size and improves biomass digestibility
Cellulose is the major renewable feedstock used in a variety of industrial processes. However, its native state, organizing itself in microfibrils...
