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Hearing loss genes reveal patterns of adaptive evolution at the coding and non-coding levels in mammals
BackgroundMammals possess unique hearing capacities that differ significantly from those of the rest of the amniotes. In order to gain insights into...
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Multinucleotide mutations cause false inferences of lineage-specific positive selection
Phylogenetic tests of adaptive evolution, such as the widely used branch-site test (BST), assume that nucleotide substitutions occur singly and...
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Semi-supervised learning for quality control of high-value wood products
The quality control of wood products is often only checked at the end of the production process so that countermeasures can only be taken with a time...
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Arthropod fauna of Thymelaea hirsuta in the Egyptian western desert, with a special reference to Olpium kochi
BackgroundNatural and semi-natural ecosystems in the Egyptian Western Desert are in serious danger of being degraded or lost through overgrazing, and...
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Genome-wide characterization of the NBLRR gene family provides evolutionary and functional insights into blast resistance in pearl millet (Cenchrus americanus (L.) Morrone)
Main conclusionThe investigation is the first report on genome-wide identification and characterization of NBLRR genes in pearl millet. We have shown...
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Analysis of Thaumatotibia leucotreta (Lepidoptera: Tortricidae: Olethreutinae) mitochondrial genomes in the context of a recent host range expansion
BackgroundThe false codling moth (FCM), Thaumatotibia leucotreta (Meyrick, 1913), is a significant pest of various important economic crops and is a...
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Reconstructing phylogenetic trees from genome-wide somatic mutations in clonal samples
Phylogenetic trees are a powerful means to display the evolutionary history of species, pathogens and, more recently, individual cells of the human...
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Data Representation
Chapter 11 focuses on the graphic outputs of the cytometric analyzes. This chapter deals with the concepts of histogram and cytogram (two-dimensional...
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The strigolactone receptor SlDWARF14 plays a role in photosynthetic pigment accumulation and photosynthesis in tomato
Key messageTomato DWARF14 regulates the development of roots, shoot branches and leaves, and also plays a role in photosynthetic pigment...
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Phylogenomic Analyses of a Clade Within the Family Flavobacteriaceae Suggest Taxonomic Reassignments of Species of the Genera Algibacter, Hyunsoonleella, Jejuia, and Flavivirga, and the Proposal of Pseudalgibacter gen. nov. and Pseudalgibacter alginicilyticus comb. nov.
The family Flavobacteriaceae forms a major branch within the phylum Bacteroidetes . Whole-genome sequence-based analysis could significantly improve...
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The spatiotemporal regulations of epicatechin biosynthesis under normal flowering and the continuous inflorescence removal treatment in Fagopyrum dibotrys
BackgroundFlowering is a critical physiological change that interferes with not only biomass yield but also secondary metabolism, such as the...
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Interactomics in plant defence: progress and opportunities
Interactomics is a branch of systems biology that deals with the study of protein–protein interactions and how these interactions influence...
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BACNN: Multi-scale feature fusion-based bilinear attention convolutional neural network for wood NIR classification
Effective development and utilization of wood resources is critical. Wood modification research has become an integral dimension of wood science...
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Support for a radiation of free-living flatworms in the African Great Lakes region and the description of five new Macrostomum species
BackgroundThe African Great Lakes have long been recognized as an excellent location to study speciation. Most famously, cichlid fishes have radiated...
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Reconstructing Gene Gains and Losses with BadiRate
Estimating gene gain and losses is paramount to understand the molecular mechanisms underlying adaptive evolution. Despite the advent of...
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Inferring the number and position of changes in selective regime in a non-equilibrium mutation-selection framework
BackgroundRecovering the historical patterns of selection acting on a protein coding sequence is a major goal of evolutionary biology....
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Benchmarking differential abundance methods for finding condition-specific prototypical cells in multi-sample single-cell datasets
BackgroundTo analyze the large volume of data generated by single-cell technologies and to identify cellular correlates of particular clinical or...
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Functional Divergence and Origin of the Vertebrate Praja Family
The Praja family is an E3 ubiquitin ligase, promoting polyubiquitination and subsequent degradation of substrates. It comprises two paralogs, praja1...
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The Retention Time of Placental Spots in Tundra Voles (Alexandromys oeconomus)
AbstractTo elucidate the resorption time of placental spots in tundra voles ( Alexandromys oeconomus Pall.) inhabiting the north taiga subzone,...
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Clinical assistant decision-making model of tuberculosis based on electronic health records
BackgroundTuberculosis is a dangerous infectious disease with the largest number of reported cases in China every year. Preventing missed diagnosis...
