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Whole Genome Sequencing of Levilactobacillus brevis HQ1-1 for Understanding the Characteristics of Its Antibiotic Resistance Genes
AbstractLactic acid bacteria (LAB) are the most commonly used microorganisms in fermented foods. Currently, in the context of antibiotic resistance...
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Exploration of genes associated with induction of the viable but non-culturable state of Campylobacter jejuni
Campylobacter jejuni is known to enter a viable but non-culturable (VBNC) state when exposed to environmental stresses. Microarray and quantitative...
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Identification of the susceptible genes and mechanism underlying the comorbid presence of coronary artery disease and rheumatoid arthritis: a network modularization analysis
ObjectiveThe comorbidities of coronary artery disease (CAD) and rheumatoid arthritis (RA) are mutual risk factors, which lead to higher mortality,...
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Molecular characterization of oleosin genes in Cyperus esculentus, a Cyperaceae plant producing oil in underground tubers
Key messageCeOLE genes exhibit a tuber-predominant expression pattern and their mRNA/protein abundances are positively correlated with oil...
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Identification of Single-Nucleotide Polymorphisms in Differentially Expressed Genes Favoring Soybean Meal Tolerance in Higher-Growth Zebrafish (Danio rerio)
Genetic variability within the same fish species could confer soybean meal (SBM) tolerance in some individuals, thus favoring growth. This study...
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De novo transcriptome sequencing of drought tolerance–associated genes in little millet (Panicum sumatrense L.)
The genome size of the little millet Panicum sumatrense is unknown, although its genome is fairly diploid (2n = 4x = 36). Despite tremendous...
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Genes involved in sex differentiation, epigenetic reprogramming, and cell fate regulate sex change in a wrasse
Summary statementSocially induced sex change is orchestrated by a novel combination of genes and epigenetic factors that govern sex differentiation...
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Identification of quantitative trait loci and candidate genes for seed folate content in soybean
Key messageFrom 61 QTL mapped, a stable QTL cluster of 992 kb was discovered on chromosome 5 for folate content and a putative candidate gene, Glyma.05G237500...
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Differential expressions of FASN, SCD, and FABP4 genes in the ribeye muscle of omega-3 oil-supplemented Tattykeel Australian White lambs
BackgroundThe concept of the functional nutritional value of health-beneficial omega-3 long-chain polyunsaturated fatty acids (n-3 LC-PUFA) is...
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Genome-wide analysis of the GDSL esterase/lipase family genes in Physcomitrium patens and the involvement of GELP31 in spore germination
In plants, the ability to produce hydrophobic substances that would provide protection from dehydration was required for the transition to land. This...
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RT-qPCR based quantitative analysis of ARO and ADH genes in Saccharomyces cerevisiae and Metschnikowia pulcherrima strains growth white grape juice
BackgroundYeast biosynthesizes fusel alcohols in fermentation through amino acid catabolism via the Ehrlich pathway. ARO8 and ARO9 genes are...
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Analysis of Lhc family genes reveals development regulation and diurnal fluctuation expression patterns in Cyperus esculentus, a Cyperaceae plant
Main conclusionSixteen Lhc genes representing 13 phylogenetic groups were identified from the full-length transcriptome of tigernut, exhibiting...
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WGDTree: a phylogenetic software tool to examine conditional probabilities of retention following whole genome duplication events
BackgroundMultiple processes impact the probability of retention of individual genes following whole genome duplication (WGD) events. In analyzing...
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Evolution and co-evolution: insights into the divergence of plant heat shock factor genes
The Heat Shock Factor (Hsf) genes are widely distributed across the plant kingdom regulating the plant response to various abiotic stresses. In...
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Identification and molecular evolution of the GLX genes in 21 plant species: a focus on the Gossypium hirsutum
BackgroundThe glyoxalase system includes glyoxalase I (GLXI), glyoxalase II (GLXII) and glyoxalase III (GLXIII), which are responsible for...
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Prevalence of the virulence genes and their correlation with carbapenem resistance amongst the Pseudomonas aeruginosa strains isolated from a tertiary hospital in China
Pseudomonas aeruginosa is one of the top-listed pathogens in nosocomial infection. It is notorious for its complicated virulence system and rapid...
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The fate of drought-related genes after polyploidization in Arachis hypogaea cv. Tifrunner
Drought stress affects plant growth and development. Cultivated peanut ( Arachis hypogaea ) was formed by a cross between A. duranensis and A. ipaensis ....
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Genome-wide identification, phylogenetic and expression pattern analysis of HSF family genes in the Rye (Secale cereale L.)
BackgroundHeat shock factor (HSF), a typical class of transcription factors in plants, has played an essential role in plant growth and developmental...
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Maternal developmental history alters transfer of circadian clock genes to offspring in Japanese quail (Coturnix japonica)
Maternal signals shape embryonic development, and in turn post-natal phenotypes. RNA deposition is one such method of maternal signalling and...
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Functional characterization of three TERMINAL FLOWER 1-like genes from Platanus acerifolia
Key messageTFL1 -like genes of the basal eudicot Platanus acerifolia have conserved roles in maintaining vegetative growth and inhibiting flowering,...
