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Molecular mechanism of brassinosteroids involved in root gravity response based on transcriptome analysis
BackgroundBrassinosteroids (BRs) are a class of phytohormones that regulate a wide range of developmental processes in plants. BR-associated mutants...
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Using Publicly Available RNA-seq Data for Expression Analysis of Genes of Interest
RNA-seq data in publicly available repositories enable the efficient reanalysis of transcript abundances in existing experiments. Graphical user...
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Full-length transcriptome analysis of Ophioglossum vulgatum: effects of experimentally identified chloroplast gene clusters on expression and evolutionary patterns
Genes with similar or related functions in chloroplasts are often arranged in close proximity, forming clusters on chromosomes. These clusters are...
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Neolamarckia cadamba hosts a putative novel deltapartitivirus: a revelation by transcriptome data-mining
Neolamarckia cadamba (Roxb.) Bosser is a medicinally important, fast-growing, timber-yielding tree species. In the present study, the virome of N....
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Transcriptome analysis of Acinetobacter calcoaceticus HX09 strain with outstanding crude-oil-degrading ability
Microbial remediation plays a pivotal role in the elimination of petroleum pollutants, making it imperative to investigate the capabilities of...
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Physiological Changes and Transcriptome Analysis of Malus zumi in Response to Salt Stress
AbstractSoil salinization has seriously affected plant growth and restricted economic development. Malus zumi is an excellent apple grafting...
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Sequencing of Transcriptome-Wide Poly(A) Tails by PAIso-seq
Poly(A) tails are added to most eukaryotic mRNA and have essential regulatory functions. However, due to its homopolymeric nature, the sequence...
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Integrative transcriptome and metabolome analysis reveals the discrepancy in the accumulation of active ingredients between Lycium barbarum cultivars
Main conclusionThe combined analysis of transcriptome and metabolome provided molecular insight into the dynamics of multiple active ingredients...
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Transcriptome analysis of sweet potato responses to potassium deficiency
BackgroundAs one of three essential nutrients, potassium is regarded as a main limiting factor for growth and development in plant. Sweet potato ( Ipo...
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Combined Analysis of Transcriptome and Small RNA Sequencing Reveals the Mechanism of UV-B-promoted Flavonoid Biosynthesis in Ginkgo biloba
AbstractFlavonoids are the most abundant medicinal ingredients in Ginkgo biloba L. leaf extract (GBE), which is an important industrial raw material...
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Meta-analysis of transcriptome reveals key genes relating to oil quality in olive
BackgroundOlive oil contains monounsaturated oleic acid up to 83% and phenolic compounds, making it an excellent source of fat. Due to its economic...
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What Is the Transcriptome and How It Is Evaluated
The concept of the transcriptome revolves around the complete set of transcripts present in a given cell type, tissue, or organ and encompasses both...
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Transcriptome Analysis of Escherichia coli Dormant Cystlike Cells
Abstract —The transcriptome of Esherichia coli cystlike dormant cells was investigated. RNA content in a single dormant cell was 0.26 fg, i.e., 13.5...
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scMTD: a statistical multidimensional imputation method for single-cell RNA-seq data leveraging transcriptome dynamic information
BackgroundSingle-cell RNA sequencing (scRNA-seq) provides a powerful tool to capture transcriptomes at single-cell resolution. However, dropout...
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Protocol of Transcriptome Analysis of Decidual Placenta Cells
AbstractThe advent of high-throughput sequencing technologies has expanded our understanding of the biological significance of non-coding regions of...
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Transcriptome analysis of waterlogging-induced adventitious root and control taproot of Mentha arvensis
Key messageThe present study reports differentially expressed transcripts in the waterlogging-induced adventitious root (AR) of Mentha arvensis; the...
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Transcriptome analysis of reproductive tract tissues of male river prawn Macrobrachium americanum
BackgroundThe river prawn, Macrobrachium americanum (M. americanum), is one of the largest prawns of the genus in Latin America and is an...
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Molecular insights into the responses of barley to yellow mosaic disease through transcriptome analysis
BackgroundBarley ( Hordeum vulgare L.) represents the fourth most essential cereal crop in the world, vulnerable to barley yellow mosaic virus...
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Transcriptome analysis and identification of chemosensory genes in the larvae of Plagiodera versicolora
BackgroundIn insects, the chemosensory system is crucial in guiding their behaviors for survival. Plagiodera versicolora (Coleoptera:...
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Integrated analysis of the transcriptome and metabolome reveals the molecular mechanism regulating cotton boll abscission under low light intensity
BackgroundCotton boll shedding is one of the main factors adversely affecting the cotton yield. During the cotton plant growth period, low light...
