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Genome-wide TCP transcription factors analysis provides insight into their new functions in seasonal and diurnal growth rhythm in Pinus tabuliformis
BackgroundPinus tabuliformis adapts to cold climate with dry winter in northern China, serving as important commercial tree species. The TEOSINTE...
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Spheroid architecture strongly enhances miR-221/222 expression and promotes oxidative phosphorylation in an ovarian cancer cell line through a mechanism that includes restriction of miR-9 expression
BackgroundTumor cell spheroids are organized multicellular structures that form during the expansive growth of carcinoma cells. Spheroids formation...
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Genome-wide identification of BBX gene family and their expression patterns under salt stress in soybean
BackgroundBBX genes are key players in the regulation of various developmental processes and stress responses, which have been identified and...
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Combined analysis of mRNA and miRNA reveals the banana potassium absorption regulatory network and validation of miRNA160a
Potassium (K) has an important effect on the growth and development of plants. Banana contains higher K content than many other fruits, and its plant...
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Genome-wide identification and transcript analysis of TCP transcription factors in grapevine
BackgroundThe plant-specific TCP transcription factors play different functions in multiple processes of plant growth and development. TCP family...
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Whole transcriptome analysis and construction of a ceRNA regulatory network related to leaf and petiole development in Chinese cabbage (Brassica campestris L. ssp. pekinensis)
BackgroundThe growth and development of leaves and petioles have a significant effect on photosynthesis. Understanding the molecular mechanisms...
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RNA-seq for comparative transcript profiling in leaves of strawberry seedlings under salinity stress
As a major economic crop, strawberry (Fragaria × ananassa Duch.) has been widely planted in the world because of their adaptability and high economic...
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Leaf rust responsive miRNA and their target genes in wheat
Small RNA sequencing (sRNA-seq) and degradome analysis were used for the identification of miRNAs and their target host genes in a pair of...
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Hydrogen-rich water promotes the formation of bulblets in Lilium davidii var. unicolor through regulating sucrose and starch metabolism
Main conclusionHRW increased the content of starch and sucrose via regulating a series of sucrose and starch synthesis genes, which induced the...
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Genomic and epigenomic determinants of heat stress-induced transcriptional memory in Arabidopsis
BackgroundTranscriptional regulation is a key aspect of environmental stress responses. Heat stress induces transcriptional memory, i.e., sustained...
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Vibrio cholerae senses human enteric α-defensin 5 through a CarSR two-component system to promote bacterial pathogenicity
Vibrio cholerae ( V. cholerae ) is an aquatic bacterium responsible for acute and fatal cholera outbreaks worldwide. When V. cholerae is ingested, the...
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QNE1 is a key flowering regulator determining the length of the vegetative period in soybean cultivars
The soybean E1 gene is a major regulator that plays an important role in flowering time and maturity. However, it remains unclear how cultivars...
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Toward cis-regulation in soybean: a 3D genome scope
In eukaryotic cells, 3D genome plays an important role in the regulation of gene spatiotemporal expression, which is essential for the biological and...
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Hybrid allele-specific ChIP-seq analysis identifies variation in brassinosteroid-responsive transcription factor binding linked to traits in maize
BackgroundGenetic variation in regulatory sequences that alter transcription factor (TF) binding is a major cause of phenotypic diversity....
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The Role of Nutrients and Nutritional Signals in the Pathogenesis of Vibrio cholerae
Vibrio cholerae, the agent of cholera, is a natural inhabitant of aquatic environments. Over the past decades, the importance of specific nutrients...
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Metabolic profile and transcriptome reveal the mystery of petal blotch formation in rose
BackgroundPetal blotch is a unique ornamental trait in angiosperm families, and blotch in rose petal is rare and has great esthetic value. However,...
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Exploring Plant Transcription Factor Databases and Regulatory Networks
This chapter provides an analysis of the involvement of transcription factors (TFs) in plant genomes. To enhance the knowledge of the regulatory...
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Transcriptome analysis reveals regulatory effects of exogenous gibberellin on locule number in tomato
The size and shape of tomato ( Solanum lycopersicum L.) fruit are determined by locule number. Gibberellin (GA) can increase locule number in tomato,...
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Fine Map** Identifies ClTFL1 Encodes a TERMINAL FLOWER 1 Protein as Putative Candidate Gene for Inflorescence Architecture and Tendril Development and in Watermelon
Tendrils are threadlike organs in vining plants that play essential role in climbing to reach more sunlight and growing space. However, the molecular...
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Metabolic characteristics of self-pollinated wheat seed under red and blue light during early development
Main conclusionBlue light has a greater effect on jasmonic acid and flavonoid accumulation in wheat seeds than red light; blue light reduces starch...
