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  1. Acoustic tweezers for high-throughput single-cell analysis

    Acoustic tweezers provide an effective means for manipulating single cells and particles in a high-throughput, precise, selective and contact-free...

    Shujie Yang, Joseph Rufo, ... Tony Jun Huang in Nature Protocols
    Article 19 July 2023
  2. Elucidating the role of T-cell exhaustion-related genes in colorectal cancer: a single-cell bioinformatics perspective

    Colorectal cancer (CRC) remains a significant global health issue. In this study, the role of T-cell exhaustion-related genes (TEXs) in CRC was...

    Wei Tu, Yan Tu, ... Haoguang Li in Functional & Integrative Genomics
    Article 02 August 2023
  3. Single-Cell Sequencing Technology and Its Application in the Study of Central Nervous System Diseases

    The mammalian central nervous system consists of a large number of cells, which contain not only different types of neurons, but also a large number...

    Yang Ding, Yu-Yuan Peng, ... Yong-Tang Wang in Cell Biochemistry and Biophysics
    Article 22 December 2023
  4. Correlative single-cell hard X-ray computed tomography and X-ray fluorescence imaging

    X-ray computed tomography (XCT) and X-ray fluorescence (XRF) imaging are two non-invasive imaging techniques to study cellular structures and...

    Zihan Lin, **ao Zhang, ... Qun Liu in Communications Biology
    Article Open access 07 March 2024
  5. Single cell epigenomic and transcriptomic analysis uncovers potential transcription factors regulating mitotic/meiotic switch

    In order to reveal the complex mechanism governing the mitotic/meiotic switch in female germ cells at epigenomic and genomic levels, we examined the...

    Fa-Li Zhang, Yan-Qin Feng, ... Wei Shen in Cell Death & Disease
    Article Open access 17 February 2023
  6. Factoring single-cell perturbations

    Bicna Song, Wei Li in Nature Methods
    Article 28 September 2023
  7. Single-cell transcriptomics across 2,534 microbial species reveals functional heterogeneity in the rumen microbiome

    Deciphering the activity of individual microbes within complex communities and environments remains a challenge. Here we describe the development of...

    Minghui Jia, Senlin Zhu, ... Hui-Zeng Sun in Nature Microbiology
    Article 12 June 2024
  8. Enzyme Identification and Screening: Activity-Based Methods

    Methods for the identification and characterization of “ideal” enzymes for industrial use in the field of biotechnology have developed rapidly in...
    Jessica Rehdorf, Alexander Pelzer, Jürgen Eck in Introduction to Enzyme Technology
    Chapter 2024
  9. Clinical-mediated discovery of pyroptosis in CD8+ T cell and NK cell reveals melanoma heterogeneity by single-cell and bulk sequence

    Histologically, melanoma tissues had fewer positive cells percentage of pyroptosis-related genes (PRGs), GZMA, GSDMB, NLRP1, IL18, and CHMP4A in...

    Ying Zhang, Yun Bai, ... Bin Li in Cell Death & Disease
    Article Open access 24 August 2023
  10. High-capacity sample multiplexing for single cell chromatin accessibility profiling

    Single-cell chromatin accessibility has emerged as a powerful means of understanding the epigenetic landscape of diverse tissues and cell types, but...

    Gregory T. Booth, Riza M. Daza, ... Cole Trapnell in BMC Genomics
    Article Open access 04 December 2023
  11. Current and future perspectives of single-cell multi-omics technologies in cardiovascular research

    Single-cell technology has become an indispensable tool in cardiovascular research since its first introduction in 2009. Here, we highlight the...

    Wilson Lek Wen Tan, Wei Qiang Seow, ... Joseph C. Wu in Nature Cardiovascular Research
    Article 18 January 2023
  12. Single-cell multiomics analysis reveals regulatory programs in clear cell renal cell carcinoma

    The clear cell renal cell carcinoma (ccRCC) microenvironment consists of many different cell types and structural components that play critical roles...

    Zhilin Long, Chengfang Sun, ... Jiaming Wen in Cell Discovery
    Article Open access 19 July 2022
  13. Sample-multiplexing approaches for single-cell sequencing

    Single-cell sequencing is widely used in biological and medical studies. However, its application with multiple samples is hindered by inefficient...

    Yulong Zhang, Siwen Xu, ... **nghua Pan in Cellular and Molecular Life Sciences
    Article 05 August 2022
  14. Mosaic integration and knowledge transfer of single-cell multimodal data with MIDAS

    Integrating single-cell datasets produced by multiple omics technologies is essential for defining cellular heterogeneity. Mosaic integration, in...

    Zhen He, Shuofeng Hu, ... **aomin Ying in Nature Biotechnology
    Article Open access 23 January 2024
  15. Single-cell dissection of aggression in honeybee colonies

    Understanding how genotypic variation results in phenotypic variation is especially difficult for collective behaviour because group phenotypes arise...

    Ian M. Traniello, Syed Abbas Bukhari, ... Gene E. Robinson in Nature Ecology & Evolution
    Article 01 June 2023
  16. Integrated analysis of single-cell and bulk RNA sequencing data reveals prognostic characteristics of lysosome-dependent cell death-related genes in osteosarcoma

    Background

    Tumor cells exhibit a heightened susceptibility to lysosomal-dependent cell death (LCD) compared to normal cells. However, the role of...

    Yueshu Wu, Jun Yang, ... **aochen Qu in BMC Genomics
    Article Open access 17 April 2024
  17. Single-cell molecular profiling using ex vivo functional readouts fuels precision oncology in glioblastoma

    Background

    Functional profiling of freshly isolated glioblastoma (GBM) cells is being evaluated as a next-generation method for precision oncology....

    Dena Panovska, Pouya Nazari, ... Frederik De Smet in Cellular and Molecular Life Sciences
    Article 12 May 2023
  18. Single-cell analysis unveils activation of mast cells in colorectal cancer microenvironment

    The role of mast cells (MCs) in colorectal cancer (CRC) remains unclear, and a comprehensive single-cell study on CRC MCs has not been conducted....

    Zhenyu **e, Liaoran Niu, ... Jianyong Zheng in Cell & Bioscience
    Article Open access 29 November 2023
  19. All-optical voltage imaging-guided postsynaptic single-cell transcriptome profiling with Voltage-Seq

    Neuronal pathways recruit large postsynaptic populations and maintain connections via distinct postsynaptic response types (PRTs). Until recently,...

    Veronika Csillag, J. C. Noble, ... János Fuzik in Nature Protocols
    Article 04 June 2024
  20. Analysis of Single-Cell Transcriptome Data in Drosophila

    The fly Drosophila is a versatile model organism that has led to fascinating biological discoveries. In the past few years, Drosophila researchers...
    Schayan Yousefian, Maria Jelena Musillo, Josephine Bageritz in Drosophila
    Protocol 2022
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