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Genetic insights into crossbred dairy cattle of Pakistan: exploring allele frequency, linkage disequilibrium, and effective population size at a genome-wide scale
Linkage disequilibrium (LD) affects genomic studies accuracy. High-density genoty** platforms identify SNPs across animal genomes, increasing LD...
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Genomic prediction based on selective linkage disequilibrium pruning of low-coverage whole-genome sequence variants in a pure Duroc population
BackgroundAlthough the accumulation of whole-genome sequencing (WGS) data has accelerated the identification of mutations underlying complex traits,...
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Wild edible plants: diversity, use pattern and livelihood linkage in Eastern India
Wild edible plants (WEPs) are of great important source of nutrition and ensuring food security for local tribal and rural poor communities of India....
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Integrating Association Map**, Linkage Map**, Fine Map** with RNA Seq Conferring Seedling Vigor Improvement for Successful Crop Establishment in Deep Sown Direct-Seeded Rice
BackgroundOngoing large-scale shift towards direct seeded rice (DSR) necessitates a convergence of breeding and genetic approaches for its sustenance...
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Construction of a SNP-based linkage map and identification of QTLs for woody biomass-related traits using an interspecific F2 population derived from Jatropha curcas × Jatropha integerrima
Jatropha curcas (known as jatropha and physic nut) can be used as an alternative source for biodiesel and biomass production. However, conventional...
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Evaluation of homozygosity levels of onion (Allium cepa L.) inbred lines using molecular markers evenly distributed in a high-resolution linkage map
Onion ( Allium cepa L.) is a cross-pollinated crop with severe inbreeding depression. Inbred breeding lines are thus commonly maintained through...
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Identification of QTLs associated with very-long chain fatty acid (VLCFA) content via linkage map** and BSA-seq in peanut
Key messageThree major QTLs qA01 , qB04.1 and qB05 for VLCFA content and their corresponding allele-specific markers will benefit peanut low VLCFA...
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Linkage map** and identification of quantitative trait loci associated with bacterial leaf blight resistance and gum content in cluster bean using the interspecific population (HG563 × Cyamopsis serrata)
Cluster bean [ Cyamopsis tetragonoloba (L.) Taub] is an important leguminous crop of India, accounting for nearly 80% of the global production. The...
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High density linkage maps, genetic architecture, and genomic prediction of growth and wood properties in Pinus radiata
BackgroundThe growing availability of genomic resources in radiata pine paves the way for significant advances in fundamental and applied genomic...
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Genome-wide association study and linkage map** reveal TaqW-6B associated with water-extractable arabinoxylan content in wheat grain
Key messageA novel QTL, TaqW-6B of water-extractable arabinoxylan content in the wheat grain on chromosome 6BL was identified and fine mapped in a...
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Molecular Linkage Map**: Map Construction and Map** of Genes/QTLs
Jute is considered as one of the major fibre crops next to cotton and is distributed throughout the tropical and sub-tropical regions of the world....
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Linkage map** combined with GWAS revealed the genetic structural relationship and candidate genes of maize flowering time-related traits
BackgroundFlowering time is an important agronomic trait of crops and significantly affects plant adaptation and seed production. Flowering time...
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Linkage analysis, GWAS, transcriptome analysis to identify candidate genes for rice seedlings in response to high temperature stress
BackgroundRice plants suffer from the rising temperature which is becoming more and more prominent. Mining heat-resistant genes and applying them to...
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LDkit: a parallel computing toolkit for linkage disequilibrium analysis
BackgroundLinkage disequilibrium (LD) analysis is broadly utilized in genetics to understand the evolutionary and demographic history and helps...
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Genome-wide SNP discovery, linkage map**, and analysis of QTL for morpho-physiological traits in rice during vegetative stage under drought stress
Drought tolerance in rice is controlled by several genes and is inherited quantitatively. Low genetic map density and the use of phenotypic traits...
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Impacts of anthropogenic land transformation on species-specific habitat amount, fragmentation, and connectivity in the Adirondack-to-Laurentians (A2L) transboundary wildlife linkage between 2000 and 2015: Implications for conservation and ecological restoration
ContextThe Adirondack-to-Laurentians (A2L) transboundary wildlife linkage is one of three north–south movement linkages that connect natural areas in...
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High-density linkage map and QTL map for yield and yield components of sorghum recombinant inbreed lines developed from Gambella × Sorcoll 163/07 using GBS
Sorghum ( Sorghum bicolor (L.) Moench), a cereal of economic importance, ensures food and fodder security for millions of rural families in the...
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Map** of QTLs associated with yield and related traits under reproductive stage drought stress in rice using SNP linkage map
BackgroundDrought stress is a major constraint for rice production worldwide. Reproductive stage drought stress (RSDS) leads to heavy yield losses in...
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Genetic loci and responsible genes for pod and seed traits under diverse environments via linkage map** analysis in soybean [Glycine max (L.) Merr.]
Soybean [ Glycine max (L.) Merr.] is widely planted in the world, and provides most of the plant protein and oil for humans. Fresh pod and seed are...
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Comprehensive Glycan Analysis of Sphingolipids in Human Serum/Plasma
Glycosphingolipids (GSLs) are glycolipids with ceramide and carbohydrate head groups that play an important role in numerous biological processes....