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Hybridization and polyploidization effects on LTR-retrotransposon activation in potato genome
Hybridization and polyploidization are major forces in plant evolution and potatoes are not an exception. It is proposed that the proliferation of...
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Remnants of SIRE1 retrotransposons in human genome?
Evolution is unaimed changes in time that a genome is shaped by a collection of random mutations, recombination, integrations, and reorganizations....
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Transferability of Nikita and Sukkula retrotransposons in domestic goose (Anser anser domesticus) genome
This article aimed to detect the existence of barley-specific Nikita and Sukkula retrotransposons in domestic geese samples and to evaluate the...
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Retrotransposons as pathogenicity factors of the plant pathogenic fungus Botrytis cinerea
BackgroundRetrotransposons are genetic elements inducing mutations in all domains of life. Despite their detrimental effect, retrotransposons can...
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iPBS-retrotransposons variations: DNA fingerprinting and the evaluation of genetic diversity and population structure in international cowpea germplasm
Cowpea belongs to the fabaceae family, originated in Africa, and grown in subtropical and tropical areas worldwide. Cowpea seeds contain high...
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The first homosporous lycophyte genome revealed the association between the recent dynamic accumulation of LTR-RTs and genome size variation
The contrasting genome size between homosporous and heterosporous plants is fascinating. Different from the heterosporous seed plants and mainly...
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Development of molecular markers based on LTR retrotransposon in the Cleistogenes songorica genome
Long terminal repeat retrotransposons (LTR-RTs) contribute a large fraction of many sequenced plant genomes and play important roles in genomic...
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Exploring the genetic diversity and population structure of upland cotton germplasm by iPBS-retrotransposons markers
BackgroundUpland cotton is one of the utmost significant strategic fiber crops, and play a vital role in the global textile industry.
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Histone chaperone HIRA complex regulates retrotransposons in embryonic stem cells
BackgroundHistone cell cycle regulator (HIRA) complex is an important histone chaperone that mediates the deposition of the H3.3 histone variant onto...
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Genome wide annotation and characterization of young, intact long terminal repeat retrotransposons (In-LTR-RTs) of seven legume species
Availability of genome sequence of different legume species has provided an opportunity to characterize the abundance, distribution, and divergence...
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Investigation of Tos17 LTR retrotransposon movements in rice (Oryza sativa L.) under nickel and boron stress
Heavy metal and metalloid pollution caused by the industrialization became a leading stress factors for agricultural plants. The increase in the...
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Isolation and Analysis of Reverse Transcriptase of Ty1-copia-Like Retrotransposons in Sugarcane
In this study, the reverse transcriptase sequences of Ty1- copia -like retrotransposons were amplified from ROC22 and Badila, and their...
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LTR-retrotransposon dynamics in common fig (Ficus carica L.) genome
BackgroundLong Terminal Repeat retrotransposons (LTR-REs) are repetitive DNA sequences that constitute a large part of the genome. The improvement of...
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Effect of salicylic acid on retrotransposon polymorphism induced by salinity stress in wheat (Triticum aestivum L.)
Wheat is one of the most significant cereal crops that is utilized to feed the entire world population. Due to extensive irrigation systems and...
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Pangenome analysis reveals transposon-driven genome evolution in cotton
BackgroundTransposable elements (TEs) have a profound influence on the trajectory of plant evolution, driving genome expansion and catalyzing...
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Cross-species transferability of IRAP retrotransposon markers and polymorphism in black pepper (Piper nigrum L.)
Black pepper is one of the most important spices, known for its use worldwide. Retrotransposons, class I mobile elements abundantly appear in the...
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LINE-1 Retrotransposition Assays in Embryonic Stem Cells
The ongoing mobilization of active non-long terminal repeat (LTR) retrotransposons continues to impact the genomes of most mammals, including humans...
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Bioinformatics Analysis Guides to LTR Retrotransposon-Derived Extrachromosomal Linear DNAs Identified by ALE-seq
ALE-seq is a method devised to identify pre-integration intermediates of LTR retrotransposons called extrachromosomal linear DNA, which can be used...
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High-Throughput Profiling of Extrachromosomal Linear DNAs of Long Terminal Repeat Retrotransposons by ALE-seq
Extrachromosomal linear DNA (eclDNA) is the reverse-transcribed cDNA intermediate derived from long terminal repeat (LTR) transposable elements (TEs)...
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Genetic diversity and population structure of Saccharomyces cerevisiae isolated from Turkish sourdough by iPBS-retrotransposons markers
Molecular DNA markers are valuable tools for analyzing genetic variation among yeast from different populations to reveal the genetically different...
