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BADASS: BActeriocin-Diversity ASsessment Software
BackgroundBacteriocins are defined as thermolabile peptides produced by bacteria with biological activity against taxonomically related species....
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Rhythmic Component Analysis Tool (RCAT): A Precise, Efficient and User-Friendly Tool for Circadian Clock Genes Analysis
High-throughput next-generation sequencing (NGS) technologies and real-time circadian dynamics reporting systems produce large amounts of...
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Statistical Analyses and Graphical Presentations in Biostatics Using Base R and the tidyverse Ecosystem
The purpose of this lesson is to provide a unified summary of how R is used to engage in statistical analyses and produce graphical presentations of...
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Avian Immunome DB: an example of a user-friendly interface for extracting genetic information
BackgroundGenomic and genetic studies often require a target list of genes before conducting any hypothesis testing or experimental verification....
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Slideflow: deep learning for digital histopathology with real-time whole-slide visualization
Deep learning methods have emerged as powerful tools for analyzing histopathological images, but current methods are often specialized for specific...
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Rex: R-linked EXcel add-in for statistical analysis of medical and bioinformatics data
BackgroundMicrosoft Excel has substantial functionalities for data management and analyses, and has been the most popular software in this field....
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StatiCAL: an interactive tool for statistical analysis of biomedical data and scientific valorization
BackgroundIn the realm of biomedical research, the growing volume, diversity and quantity of data has escalated the demand for statistical analysis...
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CandiHap: a haplotype analysis toolkit for natural variation study
Haplotype blocks greatly assist association-based map** of casual candidate genes by significantly reducing genoty** effort. The gene haplotype...
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The wildland-urban interface in Poland reflects legacies of historical national borders
ContextThe wildland-urban interface (WUI) is an area where houses are located near wildland vegetation. As such, the WUI is a focal area of wildfire...
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The personalized cancer network explorer (PeCaX) as a visual analytics tool to support molecular tumor boards
BackgroundPersonalized oncology represents a shift in cancer treatment from conventional methods to target specific therapies where the decisions are...
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BatTool: projecting bat populations facing multiple stressors using a demographic model
Bats provide ecologically and agriculturally important ecosystem services but are currently experiencing population declines caused by multiple...
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Control-FREEC viewer: a tool for the visualization and exploration of copy number variation data
BackgroundCopy number alterations (CNAs) are genetic changes commonly found in cancer that involve different regions of the genome and impact cancer...
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PastView: a user-friendly interface to explore ancestral scenarios
BackgroundAncestral character states computed from the combination of phylogenetic trees with extrinsic traits are used to decipher evolutionary...
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AMDock: a versatile graphical tool for assisting molecular docking with Autodock Vina and Autodock4
AbstractAMDock (Assisted Molecular Docking) is a user-friendly graphical tool to assist in the docking of protein-ligand complexes using Autodock...
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A User Guide to Validation, Annotation, and Evaluation of N-Terminome Datasets with MANTI
A large variety of enrichment procedures for protein N-termini have been developed to trace protease activity and determine precise cleavage sites,...
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Predicting the anthropogenic impacts on vegetation diversity of protected rangelands: an application of artificial intelligence
This study delves into anthropogenic impacts on vegetation diversity within mountainous protected rangelands, exploring habitat weakening and...
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OUTBREAK: a user-friendly georeferencing online tool for disease surveillance
The current COVID-19 pandemic has already claimed more than 3.7 million victims and it will cause more deaths in the coming months. Tools that track...
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CAPRIB: a user-friendly tool to study amino acid changes and selection for the exploration of intra-genus evolution
BackgroundThe evolution of bacteria is shaped by different mechanisms such as mutation, gene deletion, duplication, or insertion of foreign DNA among...
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Enabling Smart Agriculture: An IoT-Based Framework for Real-Time Monitoring and Analysis of Agricultural Data
With the progress in sensor and cloud technologies in contemporary times, a range of intelligent agriculture applications has gained considerable...
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MeltingPlot, a user-friendly online tool for epidemiological investigation using High Resolution Melting data
BackgroundThe rapid identification of pathogen clones is pivotal for effective epidemiological control strategies in hospital settings. High...
