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Genome-wide identification of the basic leucine zipper transcription factor genes related to starch synthesis in wheat (Triticum aestivum L.)
In plants, the basic leucine zipper (bZIP) family of transcription factors is known for its large size and diversity. Many studies have shown that...
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An approach for proteins and their encoding genes synonyms integration based on protein ontology
BackgroundBiological research is generating high volumes of data distributed across various sources. The inconsistent naming of proteins and their...
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Bioinformatic Approaches for the Detection of Fusion Genes and trans-Splicing Products (A Review)
AbstractFusion genes and transcripts can be biological markers as well as the reasons for tumor progression and development. Modern algorithms and...
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The genome of the filamentous fungus Ashbya gossypii: annotation and evolutionary implications
The 9.2 Mb genome of the filamentous fungus Ashbya gossypii consists of seven chromosomes carrying 4718 protein coding genes, 194 tRNA genes, at...
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Predicting disease genes based on multi-head attention fusion
BackgroundThe identification of disease-related genes is of great significance for the diagnosis and treatment of human disease. Most studies have...
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Global transcriptomic analysis of
Francisella tularensis SchuS4 differentially expressed genes in response to doxycycline or ciprofloxacin exposureObjectiveAs part of a research aiming at presenting an alternative approach for rapid determination of antimicrobial susceptibility by quantification...
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Whole exome sequencing analyses reveal novel genes in telomere length and their biomedical implications
Telomere length is a putative biomarker of aging and is associated with multiple age-related diseases. There are limited data on the landscape of...
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Identifying pyroptosis- and inflammation-related genes in intracranial aneurysms based on bioinformatics analysis
BackgroundIntracranial aneurysm (IA) is the most common cerebrovascular disease, and subarachnoid hemorrhage caused by its rupture can seriously...
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Whole-genome resequencing of major populations revealed domestication-related genes in yaks
BackgroundThe yak is a symbol of the Qinghai-Tibet Plateau and provides important basic resources for human life on the plateau. Domestic yaks have...
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Characterization of potential spermatogonia biomarker genes in the European eel (Anguilla anguilla)
Identification of specific molecular markers for spermatogonial stem cells in teleost is crucial for enhancing the efficacy of reproductive...
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Comparative genomics analysis provides insights into evolution and stress responses of Lhcb genes in Rosaceae fruit crops
BackgroundLight-harvesting chlorophyll a/b binding proteins ( Lhcb ) play crucial roles in plant growth, development, and the response to abiotic...
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Identification and expression analysis of SQUAMOSA promoter-binding protein (SBP) genes in mungbean
SQUAMOSA promoter-binding protein ( SBP ) genes are important transcription factors involved in plant growth and development. However, the information...
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Comparing antimicrobial resistant genes and phenotypes across multiple sequencing platforms and assays for Enterobacterales clinical isolates
IntroductionWhole genome sequencing (WGS) of bacterial isolates can be used to identify antimicrobial resistance (AMR) genes. Previous studies have...
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Transcriptome exploration of ferroptosis-related genes in TGFβ- induced lens epithelial to mesenchymal transition during posterior capsular opacification development
BackgroundPosterior capsular opacification (PCO) is the main reason affecting the long-term postoperative result of cataract patient, and it is well...
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Genome-Wide Identification and Expression Analysis of WRKY Transcription Factor Genes in Passion Fruit (Passiflora edulis)
The WRKY gene family is an important class of transcription factors in higher plants that play key roles in secondary metabolism, phytohormone...
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Molecular characterization of colistin resistance genes in a high-risk ST101/KPC-2 clone of Klebsiella pneumoniae in a University Hospital of Split, Croatia
Klebsiella pneumoniae carbapenemase-producing K. pneumoniae (KPC-KP) has become a major concern worldwide due to multidrug resistance and the ability...
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Genetic and functional mechanisms of yield-related genes in rice
Rice yield potentiality has been enhanced much after incorporating semi-dwarf trait in rice, which has led to the Green Revolution worldwide, but...
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Birth-and-death evolution of ribonuclease 9 genes in Cetartiodactyla
RNase9 plays a reproductive function and has been recognized as an important member of the ribonuclease (RNase) A superfamily, a gene family that is...
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Genome-wide identification, characterization, and expression analysis of m6A readers-YTH domain-containing genes in alfalfa
Eukaryotic messenger RNAs (mRNAs) are often modified with methyl groups at the N6 position of adenosine (m6A), and these changes are interpreted by...
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Comparative analysis of POD genes and their expression under multiple hormones in Pyrus bretschenedri
BackgroundClass III peroxidase (POD) enzymes play vital roles in plant development, hormone signaling, and stress responses. Despite extensive...
