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  1. Molecular Mechanism of Action of GPR91 Agonists and Antagonists: Insights from Molecular Dynamics Simulation

    G protein-coupled receptor 91 (GPR91) has garnered widespread attention as a prospective therapeutic target for metabolic diseases. However, no...

    Junjie Zhang, Lunan Lv, ... Wei Fu in Chemical Research in Chinese Universities
    Article 04 June 2024
  2. Proposed molecular mechanism of non-competitive inhibition using molecular dynamics simulations between α-glucosidase enzyme and mangostin compound as antidiabetic

    Context

    Further understanding of the molecular mechanisms is necessary since it is important for designing new drugs. This study aimed to understand...

    Ahmad Fariz Maulana, Iman Permana Maksum, ... Yaya Rukayadi in Journal of Molecular Modeling
    Article 18 April 2024
  3. Molecular mechanism of GPCR spatial organization at the plasma membrane

    G-protein-coupled receptors (GPCRs) mediate many critical physiological processes. Their spatial organization in plasma membrane (PM) domains is...

    Gabriele Kockelkoren, Line Lauritsen, ... Dimitrios Stamou in Nature Chemical Biology
    Article 17 July 2023
  4. Unraveling the mechanism of tip-enhanced molecular energy transfer

    Electronic Energy Transfer (EET) between chromophores is fundamental in many natural light-harvesting complexes, serving as a critical step for solar...

    Colin V. Coane, Marco Romanelli, ... Stefano Corni in Communications Chemistry
    Article Open access 15 February 2024
  5. Molecular docking and molecular dynamics simulation decoding molecular mechanism of EDCs binding to hERRγ

    Context

    Human estrogen-related receptor γ (hERRγ) is a key protein involved in various endocrines and metabolic signaling. Numerous environmental...

    Ying Sun, Lin Chen, ... Ruige Wang in Journal of Molecular Modeling
    Article 09 April 2024
  6. Study of the antidiabetic mechanism of berberine compound on FOXO1 transcription factor through molecular docking and molecular dynamics simulations

    Context

    Diabetes mellitus (DM) is a metabolic disorder disease that causes hyperglycemia conditions and associated with various chronic complications...

    Iman Permana Maksum, Rustaman Rustaman, ... Zahra Khira Nafisa in Journal of Molecular Modeling
    Article 09 July 2024
  7. Exploring the binding mechanism of a small molecular Hsp70-Bim PPI inhibitor through molecular dynamic simulation

    Context

    The interface of Hsp70-Bim protein–protein interaction (PPI) has been identified as a specific target for Chronic Myeloid Leukemia (CML)...

    **n Li, Yuying Wang, ... Zhichao Zhang in Journal of Molecular Modeling
    Article 13 February 2024
  8. Molecular imaging: design mechanism and bioapplications

    Molecular imaging is a non-invasive method to image and analyze the concentration and activity of functional biomolecules in cells or in vivo at...

    Lanlan Chen, Yifan Lyu, ... Weihong Tan in Science China Chemistry
    Article 03 March 2023
  9. Mechanism of Erzhiwan in treating osteoporosis based on molecular docking technology and molecular dynamics simulation

    This experiment was a network pharmacology research based on the theoretical system of traditional Chinese medicine. TCMSP database, PubChem...

    Yanling Li, Ziliang Li, ... Weijuan Han in Journal of Molecular Modeling
    Article 24 December 2022
  10. Molecular insights of nanozymes from design to catalytic mechanism

    Emerging as cost-effective potential alternatives to natural enzymes, nanozymes have attracted increasing interest in broad fields. To exploit the...

    Yuan Xu, Zhixin Zhou, ... Yuanjian Zhang in Science China Chemistry
    Article 09 February 2023
  11. Molecular dynamics-based study of the modification mechanism of asphalt by graphene oxide

    Context

    Graphene oxide(GO) has been widely used in asphalt modification due to its excellent properties. To reveal the interaction effect between GO...

    Zhenghong Xu, Zijia **ong, ... ** Fan in Journal of Molecular Modeling
    Article 11 November 2023
  12. Thermal decomposition mechanism of HMX/HTPB hybrid explosives studied by reactive molecular dynamics

    Context

    The thermal decomposition process of octahydro-1,3,5,7-tetranitro-1,3,5,7-tetrazocine/hydroxyl-terminated polybutadiene (HMX/HTPB) hybrid...

    Fang Chen, Tianhao Li, ... Duanlin Cao in Journal of Molecular Modeling
    Article 22 June 2024
  13. A molecular electron density theory study on the [3 + 2] cycloaddition reaction of a 2,4-dienone and a nitrone: regioselectivity, diastereoselectivity, energetic aspects, and molecular mechanism

    [3 + 2] Cycloaddition reaction of N -methyltrifluoromethylmethylene nitrone ( MFN ) and 2 E ,4 E -5-(benzo[1,3]dioxol-5-yl)-1-(piperidin-1-yl)penta-2,4-dien-...

    Mousa Soleymani, Mahdieh Chegeni, ... Reza Khazaeinejad in Monatshefte für Chemie - Chemical Monthly
    Article 08 May 2024
  14. Molecular mechanism of selective adsorption and separation of n-butane/i-butane on MFI zeolite

    MFI zeolite is one of the most attractive molecular sieve materials for selective adsorption and separation of C4 hydrocarbon isomers. Grand...

    Huan Wang, Qiang Li, ... Lijuan Song in Adsorption
    Article 17 November 2023
  15. Molecular dynamics simulations reveal the inhibition mechanism of Cdc42 by RhoGDI1

    Cell division control protein 42 homolog (Cdc42), which controls a variety of cellular functions including rearrangements of the cell cytoskeleton,...

    Yi**g Zhang, Shiyao Chen, ... Yaxue Zhao in Journal of Computer-Aided Molecular Design
    Article 07 June 2023
  16. Molecular Mechanism Investigations of SsoPTP: Dual General Acids and Pathways

    Abstract

    Protein-tyrosine phosphatases (PTPs) catalyze the dephosphorylation process of the tyrosine. The archaeal PTP, sulfolobus solfataricus PTP...

    Lianbo Zhang, Ge Wu, ... Guibin Li in Russian Journal of Physical Chemistry A
    Article 01 July 2023
  17. Mechanism of ethanol/water reverse separation through a functional graphene membrane: a molecular simulation investigation

    Reverse-selective membranes have attracted considerable interest for bioethanol production. However, to date, the reverse-separation performance of...

    Quan Liu, **an Wang, ... Kai-Ge Zhou in Frontiers of Chemical Science and Engineering
    Article 17 December 2022
  18. Decoding the deactivation mechanism of R192W mutation of ZAP-70 using molecular dynamics simulations and binding free energy calculations

    Context

    ZAP-70 (zeta-chain-associated protein of 70 kDa), serving as a critical regulator for T cell antigen receptor signaling, represents an...

    Xuehua Zhang, Wenqi Liang, ... Bei Li in Journal of Molecular Modeling
    Article 13 November 2023
  19. Studying the Mechanism of the Electrocatalyic Reaction for Producing Molecular Hydrogen Using the N-Methyl-2,4,6-triphenylpyridinyl Cation According to DFT

    Abstract

    DFT is used to study thermodynamic aspects of the mechanism of the electrocatalytic formation of molecular hydrogen using...

    A. V. Dolganov, L. A. Klimaeva, ... A. V. Knyazev in Russian Journal of Physical Chemistry A
    Article 03 August 2023
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