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  1. Microbiota-mediated nitrogen fixation and microhabitat homeostasis in aerial root-mucilage

    Background

    Plants sustain intimate relationships with diverse microbes. It is well-recognized that these plant-associated microbiota shape individual...

    Zhiqiang Pang, **nyu Mao, ... Peng Xu in Microbiome
    Article Open access 21 April 2023
  2. Diazotrophic Nitrogen Fixation in the Rhizosphere and Endosphere

    A wide variety of nitrogen (N)-fixing Bacteria and Archaea inhabit plant rhizospheres and endospheres. This diazotrophic community is often dominated...
    Chapter 2021
  3. Depth-dependent variability of biological nitrogen fixation and diazotrophic communities in mangrove sediments

    Background

    Nitrogen-fixing prokaryotes (diazotrophs) contribute substantially to nitrogen input in mangrove sediments, and their structure and...

    Zhiwen Luo, Qiu** Zhong, ... Cheng Wang in Microbiome
    Article Open access 27 October 2021
  4. Microbiota and functional analyses of nitrogen-fixing bacteria in root-knot nematode parasitism of plants

    Background

    Root-knot nematodes (RKN) are among the most important root-damaging plant-parasitic nematodes, causing severe crop losses worldwide. The...

    Ye Li, Shaonan Lei, ... Baoyu Tian in Microbiome
    Article Open access 10 March 2023
  5. Stratified microbial communities in Australia’s only anchialine cave are taxonomically novel and drive chemotrophic energy production via coupled nitrogen-sulphur cycling

    Background

    Anchialine environments, in which oceanic water mixes with freshwater in coastal aquifers, are characterised by stratified water columns...

    Timothy M. Ghaly, Amaranta Focardi, ... Sasha G. Tetu in Microbiome
    Article Open access 26 August 2023
  6. The bacterial communities of Alaskan mosses and their contributions to N2-fixation

    Background

    Mosses in high-latitude ecosystems harbor diverse bacterial taxa, including N 2 -fixers which are key contributors to nitrogen dynamics in...

    Hannah Holland-Moritz, Julia E. M. Stuart, ... Noah Fierer in Microbiome
    Article Open access 23 February 2021
  7. Holobiont nitrogen control and its potential for eutrophication resistance in an obligate photosymbiotic jellyfish

    Background

    Marine holobionts depend on microbial members for health and nutrient cycling. This is particularly evident in cnidarian-algae symbioses...

    Till Röthig, Giulia Puntin, ... David M. Baker in Microbiome
    Article Open access 02 June 2021
  8. Radiopharmaceutical Discovery with 11CO2-Fixation Methods Inspired by Green Chemistry

    Efforts to use sustainable and abundant feedstocks for chemical synthesis have produced efficient methods for incorporating carbon dioxide into small...
    Benjamin H. Rotstein, Neil Vasdev in Green Chemistry in Drug Discovery
    Protocol 2022
  9. Long-term nitrogen deposition enhances microbial capacities in soil carbon stabilization but reduces network complexity

    Background

    Anthropogenic activities have increased the inputs of atmospheric reactive nitrogen (N) into terrestrial ecosystems, affecting soil carbon...

    **ngyu Ma, Tengxu Wang, ... Yunfeng Yang in Microbiome
    Article Open access 28 July 2022
  10. Metagenomics reveals global-scale contrasts in nitrogen cycling and cyanobacterial light-harvesting mechanisms in glacier cryoconite

    Background

    Cryoconite granules are mineral–microbial aggregates found on glacier surfaces worldwide and are hotspots of biogeochemical reactions in...

    Takumi Murakami, Nozomu Takeuchi, ... Takahiro Segawa in Microbiome
    Article Open access 23 March 2022
  11. Suppressed N fixation and diazotrophs after four decades of fertilization

    Background

    N fixation is one of the most important microbially driven ecosystem processes on Earth, allowing N to enter the soil from the atmosphere,...

    Kunkun Fan, Manuel Delgado-Baquerizo, ... Haiyan Chu in Microbiome
    Article Open access 31 October 2019
  12. Novel insights into the rhizosphere and seawater microbiome of Zostera marina in diverse mariculture zones

    Background

    Seagrasses offer various ecosystem services and possess high levels of primary productivity. However, the development of mariculture has...

    Hao Sun, Tianyu Wang, ... Yanying Zhang in Microbiome
    Article Open access 14 February 2024
  13. A portfolio of geographically distinct laboratory-adapted Plasmodium falciparum clones with consistent infection rates in Anopheles mosquitoes

    Background

    The ability to culture Plasmodium falciparum continuously in vitro has enabled stable access to asexual and sexual parasites for malaria...

    Marga van de Vegte-Bolmer, Wouter Graumans, ... Teun Bousema in Malaria Journal
    Article Open access 26 September 2021
  14. The core root microbiome of Spartina alterniflora is predominated by sulfur-oxidizing and sulfate-reducing bacteria in Georgia salt marshes, USA

    Background

    Salt marshes are dominated by the smooth cordgrass Spartina alterniflora on the US Atlantic and Gulf of Mexico coastlines. Although soil...

    Jose L. Rolando, Max Kolton, ... Joel E. Kostka in Microbiome
    Article Open access 01 March 2022
  15. Interplay between autotrophic and heterotrophic prokaryotic metabolism in the bathypelagic realm revealed by metatranscriptomic analyses

    Background

    Heterotrophic microbes inhabiting the dark ocean largely depend on the settling of organic matter from the sunlit ocean. However, this...

    Abhishek Srivastava, Daniele De Corte, ... Eva Sintes in Microbiome
    Article Open access 04 November 2023
  16. Community structure of coral microbiomes is dependent on host morphology

    Background

    The importance of symbiosis has long been recognized on coral reefs, where the photosynthetic dinoflagellates of corals (Symbiodiniaceae)...

    Kathleen M. Morrow, M. Sabrina Pankey, Michael P. Lesser in Microbiome
    Article Open access 28 July 2022
  17. Observation of Bacteriophage Ultrastructure by Cryo-Electron Microscopy

    Transmission electron microscopy (TEM) is an ideal method to observe and determine the structure of bacteriophages. From early studies by negative...
    Ana Cuervo, Patricia Losana, José L. Carrascosa in Bacteriophage Therapy
    Protocol 2024
  18. Long-read assembled metagenomic approaches improve our understanding on metabolic potentials of microbial community in mangrove sediments

    Background

    Mangrove wetlands are coastal ecosystems with important ecological features and provide habitats for diverse microorganisms with key roles...

    Zhi-Feng Zhang, Li-Rui Liu, ... Meng Li in Microbiome
    Article Open access 23 August 2023
  19. Strategies of chemolithoautotrophs adapting to high temperature and extremely acidic conditions in a shallow hydrothermal ecosystem

    Background

    Active hydrothermal vents create extreme conditions characterized by high temperatures, low pH levels, and elevated concentrations of heavy...

    Wenchao Deng, Zihao Zhao, ... Yao Zhang in Microbiome
    Article Open access 05 December 2023
  20. Functional gene-guided enrichment plus in situ microsphere cultivation enables isolation of new crucial ureolytic bacteria from the rumen of cattle

    Background

    Ruminants can utilize urea as a dietary nitrogen source owing to their ability to recycle urea-N back to the rumen where numerous ureolytic...

    Sijia Liu, Zhongtang Yu, ... Shengguo Zhao in Microbiome
    Article Open access 15 April 2023
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