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  1. A pilot investigation of the association between HIV-1 Vpr amino acid sequence diversity and the tryptophan-kynurenine pathway as a potential mechanism for neurocognitive impairment

    HIV infection compromises both the peripheral and central immune systems due to its pathogenic and neuropathogenic features. The mechanisms driving...

    Levanco Keegan Asia, Esmé Jansen Van Vuren, ... Monray Edward Williams in Virology Journal
    Article Open access 23 February 2024
  2. Phylogeny and amino acid analysis in single and mixed bovine papillomavirus infections in Southern Brazil, 2016-2020

    Bovine papillomaviruses (BPVs) exhibit a high degree of genetic variability, and several viral types have been identified based on analysis of the L1...

    Ingryd Merchioratto, Pablo Sebastian Britto de Oliveira, ... Eduardo Furtado Flores in Archives of Virology
    Article 07 January 2023
  3. Amino acid profile alteration in age-related atrial fibrillation

    Background

    Amino acids (AAs) are one of the primary metabolic substrates for cardiac work. The correlation between AAs and both atrial fibrillation...

    Yunying Huang, Qiuzhen Lin, ... Qiming Liu in Journal of Translational Medicine
    Article Open access 09 March 2024
  4. Impact of subtype C-specific amino acid variants on HIV-1 Tat-TAR interaction: insights from molecular modelling and dynamics

    Background

    HIV-1 produces Tat, a crucial protein for transcription, viral replication, and CNS neurotoxicity. Tat interacts with TAR, enhancing HIV...

    Piwai T. Gotora, Keaghan Brown, ... Monray E. Williams in Virology Journal
    Article Open access 25 June 2024
  5. High resolution HLA-DRB1 analysis and shared molecular amino acid signature of DRβ1 molecules in Occult hepatitis B infection

    Aim

    To investigate the association of human leukocyte antigen (HLA)-DRB1 alleles and the variations of polymorphic amino acid changes in DRβ1 chain in...

    Tianju Wang, Chunmei Shen, ... Jun Qi in BMC Immunology
    Article Open access 25 April 2022
  6. Complete genome sequence and phylogenetic analysis of a newly discovered fusagra-like virus infecting Carica papaya in Ecuador

    A new fusagra-like virus infecting papaya ( Carica papaya L.) was genetically characterized. The genome of the virus, provisionally named "papaya...

    Juan F. Cornejo-Franco, Edison Reyes-Proaño, ... Diego F. Quito-Avila in Archives of Virology
    Article 20 June 2024
  7. Phosphoproteomics revealed cellular signals immediately responding to disruption of cancer amino acid homeostasis induced by inhibition of l-type amino acid transporter 1

    Background

    Cancer-upregulated l -type amino acid transporter 1 (LAT1; SLC7A5) supplies essential amino acids to cancer cells. LAT1 substrates are not...

    Hiroki Okanishi, Ryuichi Ohgaki, ... Yoshikatsu Kanai in Cancer & Metabolism
    Article Open access 10 November 2022
  8. Complete nucleotide sequence of chrysanthemum virus D, a polero-like virus

    A putative new polerovirus, named “chrysanthemum virus D” (ChVD), was detected in a Chrysanthemum morifolium plant in South Korea. The virus was...

    Davaajargal Igori, Se Eun Kim, ... Jae Sun Moon in Archives of Virology
    Article 12 January 2024
  9. Amino acid substitutions in the region between RpoB clusters II and III on rifampin susceptibility in Haemophilus influenzae

    Background

    Rifampin is a potent chemoprophylactic antibiotic for Haemophilus influenzae infection, and the resistance rate in H. influenzae is low....

    Cheng-Hsun Ho, Chuan-Jung Chen, ... Pei-Yi Su in European Journal of Clinical Microbiology & Infectious Diseases
    Article 31 October 2023
  10. A single amino acid at position 31 in the N-terminus of the coat protein of cucumber mosaic virus determines its avirulence function for RCY1-conferred virus resistance

    The coat protein (CP) of the cucumber mosaic virus (CMV) yellow strain [CMV(Y)], but not the CMV B2 strain [CMV(B2)], serves as an avirulence...

    Hideki Takahashi, Yuki Ando, ... Shuhei Miyashita in Archives of Virology
    Article 05 March 2024
  11. Complete genome sequence analysis of a new potyvirus isolated from Paris polyphylla var. yunnanensis

    The complete genome sequence of a new potyvirus from Paris polyphylla var. yunnanensis was determined. Its genomic RNA consists of 9571 nucleotides...

    Boxin Zhang, Qiannan Li, ... Jiahong Dong in Archives of Virology
    Article 07 January 2023
  12. Evolutionary divergence of TLR9 through ancestral sequence reconstruction

    The transmembrane pattern recognition receptor, Toll-like receptor (TLR), are best known for their roles in innate immunity via recognition of...

    Manisha Ghosh, Surajit Basak, Shanta Dutta in Immunogenetics
    Article 05 March 2024
  13. The artificial amino acid change in the sialic acid-binding domain of the hemagglutinin neuraminidase of newcastle disease virus increases its specificity to HCT 116 colorectal cancer cells and tumor suppression effect

    Background

    Oncolytic viruses are being studied and developed as novel cancer treatments. Using directed evolution technology, structural modification...

    Bo-Kyoung Jung, Yong Hee An, ... Hyun Jang in Virology Journal
    Article Open access 04 January 2024
  14. Complete genome sequence analysis and biological characteristics of Newcastle disease viruses from different hosts in China

    Newcastle disease (ND) is one of the most serious diseases affecting poultry worldwide. In 2022, we studied two strains of Newcastle disease virus...

    Huadong Liu, Tingting Li, ... Dongcai Wang in Virus Genes
    Article 16 March 2023
  15. Whole-genome sequence analysis of a novel orthobunyavirus isolated in Japan in the 1980s

    Two viruses isolated from Culicoides biting midges in Japan and preserved in a frozen state for over three decades were genetically characterized by...

    Tohru Yanase, Katsunori Murota, Yuto Suda in Archives of Virology
    Article 19 January 2023
  16. Complete genome sequence analysis of Valeriana jatamansi tymovirus 1: a novel member of the genus Tymovirus infecting Valeriana jatamansi Jones

    A new positive-sense, single-stranded RNA virus, tentatively named "Valeriana jatamansi tymovirus 1" (VaJV1, OQ730267), was isolated from Valeriana...

    Bifan Chu, Rex Frimpong Anane, ... Mingfu Zhao in Archives of Virology
    Article 07 September 2023
  17. General control nonderepressible 1 interacts with cationic amino acid transporter 1 and affects Aedes aegypti fecundity

    Background

    The amino acid transporter protein cationic amino acid transporter 1 (CAT1) is part of the nutrient sensor in the fat body of mosquitoes. A...

    Matthew Pinch, Theodore Muka, ... Immo A. Hansen in Parasites & Vectors
    Article Open access 21 October 2022
  18. Cell-autonomous effect of cardiomyocyte branched-chain amino acid catabolism in heart failure in mice

    Parallel to major changes in fatty acid and glucose metabolism, defect in branched-chain amino acid (BCAA) catabolism has also been recognized as a...

    Jia-yu Yu, Nancy Cao, ... Chen Gao in Acta Pharmacologica Sinica
    Article Open access 29 March 2023
  19. Detection of hidden intronic DDC variant in aromatic L-amino acid decarboxylase deficiency by adaptive sampling

    Aromatic l-amino acid decarboxylase (AADC) deficiency is an autosomal recessive neurotransmitter disorder caused by pathogenic DOPA decarboxylase ( DDC ...

    Eriko Koshimizu, Mitsuhiro Kato, ... Naomichi Matsumoto in Journal of Human Genetics
    Article 12 January 2024
  20. Consensus insertion/deletions and amino acid variations of all coding and noncoding regions of the SARS-CoV-2 Omicron clades, including the XBB and BQ.1 lineages

    The currently dominant Omicron variant of severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2) has swiftly diverged into clades. To predict...

    Hamong Suharsono, Bayu K. Mahardika, ... Gusti N. Mahardika in Archives of Virology
    Article 08 May 2023
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