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  1. Size matters: the impact of nucleus size on results from spatial transcriptomics

    Background

    Visium Spatial Gene Expression (ST) is a method combining histological spatial information with transcriptomics profiles directly from...

    Elyas Mohammadi, Katarzyna Chojnowska, ... Jakub Mieczkowski in Journal of Translational Medicine
    Article Open access 21 April 2023
  2. Human Alzheimer’s disease reactive astrocytes exhibit a loss of homeostastic gene expression

    Astrocytes are one of the brain’s major cell types and are responsible for maintaining neuronal homeostasis via regulating the extracellular...

    David L. Dai, Mingyao Li, Edward B. Lee in Acta Neuropathologica Communications
    Article Open access 02 August 2023
  3. Empagliflozin and liraglutide ameliorate HFpEF in mice via augmenting the Erbb4 signaling pathway

    Heart failure with preserved ejection fraction (HFpEF) is closely associated with metabolic derangement. Sodium glucose cotransporter-2 inhibitors...

    Article 08 April 2024
  4. Relationship between sex biases in gene expression and sex biases in autism and Alzheimer’s disease

    Background

    Sex differences in the brain may play an important role in sex-differential prevalence of neuropsychiatric conditions.

    Methods ...
    Stuart B. Fass, Bernard Mulvey, ... Joseph D. Dougherty in Biology of Sex Differences
    Article Open access 07 June 2024
  5. Influenza A Virus: Cellular Entry

    The frequent emergence of pathogenic viruses with pandemic potential has posed a significant threat to human health and economy, despite enormous...
    Yasuyuki Miyake, Yuya Hara, ... Indranil Banerjee in Virus Infected Cells
    Chapter 2023
  6. Analysis and experimental validation of necroptosis-related molecular classification, immune signature and feature genes in Alzheimer’s disease

    Necroptosis, a programmed cell death pathway, has been demonstrated to be activated in Alzheimer’s disease (AD). However, the precise role of...

    Piaopiao Lian, **ng Cai, ... Yan Xu in Apoptosis
    Article Open access 13 March 2024
  7. Single-nucleus transcriptomic analysis reveals the relationship between gene expression in oligodendrocyte lineage and major depressive disorder

    Background

    Major depressive disorder (MDD) is a common mental illness that affects millions of people worldwide and imposes a heavy burden on...

    Yin** **e, Lijuan Chen, ... Gaohua Wang in Journal of Translational Medicine
    Article Open access 27 January 2024
  8. Adeno-associated virus-mediated trastuzumab delivery to the central nervous system for human epidermal growth factor receptor 2+ brain metastasis

    Trastuzumab improves overall survival for HER2+ breast cancer, but its short half-life in the cerebrospinal fluid (~2–4 days) and delivery...

    Marcela S. Werner, Shweta Aras, ... James M. Wilson in Cancer Gene Therapy
    Article 13 March 2024
  9. Dynamics of peripheral T cell exhaustion and monocyte subpopulations in neurocognitive impairment and brain atrophy in chronic HIV infection

    Background

    HIV-associated neurocognitive disorders (HAND) is hypothesized to be a result of myeloid cell-induced neuro-inflammation in the central...

    Brooks I. Mitchell, Isabelle E. Yazel Eiser, ... Cecilia M. Shikuma in Journal of NeuroVirology
    Article Open access 29 June 2024
  10. Molecular and spatial heterogeneity of microglia in Rasmussen encephalitis

    Rasmussen encephalitis (RE) is a rare childhood neurological disease characterized by progressive unilateral loss of function, hemispheric atrophy...

    Jesse J. Westfall, Wesley N. Schwind, ... Tracy A. Bedrosian in Acta Neuropathologica Communications
    Article Open access 21 November 2022
  11. Single-nucleus RNA sequencing and deep tissue proteomics reveal distinct tumour microenvironment in stage-I and II cervical cancer

    Background

    Cervical cancer (CC) is the 3 rd most common cancer in women and the 4 th leading cause of deaths in gynaecological malignancies, yet the...

    **aosong Liu, Guoying Ni, ... Tianfang Wang in Journal of Experimental & Clinical Cancer Research
    Article Open access 23 January 2023
  12. Longitudinal scRNA-seq analysis in mouse and human informs optimization of rapid mouse astrocyte differentiation protocols

    Macroglia (astrocytes and oligodendrocytes) are required for normal development and function of the central nervous system, yet many questions remain...

    Paul W. Frazel, David Labib, ... Shane A. Liddelow in Nature Neuroscience
    Article 11 September 2023
  13. CNTN1 in the Nucleus Accumbens is Involved in Methamphetamine-Induced Conditioned Place Preference in Mice

    Methamphetamine (Meth), a commonly used central nervous system stimulant, is highly addictive. Currently, there is no effective treatment for Meth...

    Linxuan Zhang, Zehao Zeng, ... Fang Li in Neurotoxicity Research
    Article 04 April 2023
  14. Myeloid cell replacement is neuroprotective in chronic experimental autoimmune encephalomyelitis

    Multiple sclerosis (MS) is an autoimmune disease characterized by demyelination of the central nervous system (CNS). Autologous hematopoietic cell...

    Marius Marc-Daniel Mader, Alan Napole, ... Marius Wernig in Nature Neuroscience
    Article 21 March 2024
  15. Dissection of artifactual and confounding glial signatures by single-cell sequencing of mouse and human brain

    A key aspect of nearly all single-cell sequencing experiments is dissociation of intact tissues into single-cell suspensions. While many protocols...

    Samuel E. Marsh, Alec J. Walker, ... Beth Stevens in Nature Neuroscience
    Article 08 March 2022
  16. In silico stress fibre content affects peak strain in cytoplasm and nucleus but not in the membrane for uniaxial substrate stretch

    Existing in silico models for single cell mechanics feature limited representations of cytoskeletal structures that contribute substantially to the...

    Tamer Abdalrahman, Neil H. Davies, Thomas Franz in Medical & Biological Engineering & Computing
    Article 14 August 2021
  17. Process Analysis and Parameter Selection of Cardiomyocyte Electroporation Based on the Finite Element Method

    Purpose

    Pulsed-field ablation (PFA) has attracted attention for the treatment of atrial fibrillation. This study aimed to further explore the...

    Hao Zhang, **ngkai Ji, ... **aomei Wu in Cardiovascular Engineering and Technology
    Article 02 November 2023
  18. Single-nucleus chromatin accessibility and transcriptomic characterization of Alzheimer’s disease

    The gene-regulatory landscape of the brain is highly dynamic in health and disease, coordinating a menagerie of biological processes across distinct...

    Samuel Morabito, Emily Miyoshi, ... Vivek Swarup in Nature Genetics
    Article 08 July 2021
  19. Single-nucleus and spatial transcriptome profiling of pancreatic cancer identifies multicellular dynamics associated with neoadjuvant treatment

    Pancreatic ductal adenocarcinoma (PDAC) is a highly lethal and treatment-refractory cancer. Molecular stratification in pancreatic cancer remains...

    William L. Hwang, Karthik A. Jagadeesh, ... Aviv Regev in Nature Genetics
    Article 28 July 2022
  20. Multimodal single-cell and whole-genome sequencing of small, frozen clinical specimens

    Single-cell genomics enables dissection of tumor heterogeneity and molecular underpinnings of drug response at an unprecedented resolution 1 11 ....

    Yi** Wang, Joy Linyue Fan, ... Benjamin Izar in Nature Genetics
    Article 09 January 2023
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