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  1. Single-Molecule Nanomechanical Genoty** with DNA Origami-Based Shape IDs

    Atomic force microscopy (AFM)-based nanomechanical imaging provides a sub-10-nm-resolution approach for imaging biomolecules under ambient...
    Qian Li, Jie Chao, ... Chunhai Fan in DNA and RNA Origami
    Protocol 2023
  2. Detection of low-frequency mutations in clinical samples by increasing mutation abundance via the excision of wild-type sequences

    The efficiency of DNA-enrichment techniques is often insufficient to detect mutations that occur at low frequencies. Here we report a DNA-excision...

    Wei Chen, Haiqi Xu, ... Mei** Zhao in Nature Biomedical Engineering
    Article 27 July 2023
  3. Epigenetically Modified DNA Fragments

    Islet β-cell death is a hallmark of both type 1 and type 2 diabetes, resulting in decreased insulin levels. In recent years, circulating cell-free...
    Sarah A. Tersey, Raghavendra G. Mirmira in Biomarkers in Diabetes
    Reference work entry 2023
  4. DNA barcoding of black flies (Diptera: Simuliidae) in Indonesia

    Background

    DNA barcoding is a valuable taxonomic tool for rapid and accurate species identification and cryptic species discovery in black flies....

    Yan **n Hew, Zubaidah Ya’cob, ... Van Lun Low in Parasites & Vectors
    Article Open access 22 July 2023
  5. Sensing the DNA-mismatch tolerance of catalytically inactive Cas9 via barcoded DNA nanostructures in solid-state nanopores

    Single-molecule quantification of the strength and sequence specificity of interactions between proteins and nucleic acids would facilitate the...

    Sarah E. Sandler, Nicole E. Weckman, ... Ulrich F. Keyser in Nature Biomedical Engineering
    Article Open access 07 August 2023
  6. Protein Coating of DNA Origami

    DNA origamiDNAorigamis has emerged as a common technique to create custom two- (2D) and three-dimensional (3D) structures at the nanoscale. These DNA...
    Heini Ijäs, Mauri A. Kostiainen, Veikko Linko in DNA and RNA Origami
    Protocol 2023
  7. GCN5 mediates DNA-PKcs crotonylation for DNA double-strand break repair and determining cancer radiosensitivity

    Background

    DNA double-strand break (DSB) induction and repair are important events for determining cell survival and the outcome of cancer...

    Yang Han, Hongling Zhao, ... **-Kun Zhou in British Journal of Cancer
    Article Open access 04 April 2024
  8. HPV18 L1 and long control region sequences variation and E6/E7 differential expression in nasopharyngeal and cervical cancers: a comparative study

    Background

    The role of high-risk human papillomaviruses (hr-HPVs) in cervical cancer (CC) pathogenesis has long been established. Knowledge about the...

    Sheila Santa, Charles A. Brown, ... Emmanuel A. Tagoe in Infectious Agents and Cancer
    Article Open access 01 December 2023
  9. Regulation potential of transcribed simple repeated sequences in develo** neurons

    Simple repeated sequences (SRSs), defined as tandem iterations of microsatellite- to satellite-sized DNA units, occupy a substantial part of the...

    Tek Hong Chung, Anna Zhuravskaya, Eugene V. Makeyev in Human Genetics
    Article Open access 28 December 2023
  10. Development of a highly sensitive and specific intact proviral DNA assay for HIV-1 subtype B and C

    Introduction

    HIV reservoir quantification is essential for evaluation of HIV curative strategies and may provide valuable insights about reservoir...

    N. V. E. J. Buchholtz, M. M. Nühn, ... M. Nijhuis in Virology Journal
    Article Open access 31 January 2024
  11. Genetic variation of the freshwater snail Indoplanorbis exustus (Gastropoda: Planorbidae) in Thailand, inferred from 18S and 28S rDNA sequences

    Indoplanorbis exustus , a freshwater pulmonate snail, is widely distributed in tropical and subtropical zones and plays a significant role as an...

    Abdulhakam Dumidae, Chanakan Subkrasae, ... Apichat Vitta in Parasitology Research
    Article 12 January 2024
  12. Analysis of Regulatory DNA Sequences by Dual-Luciferase Reporter Assays in Ewing Sarcoma

    Reporter gene assays allow for examining the influence of regulatory DNA sequences on the transcription of target genes. In Ewing sarcoma, the study...
    Tilman L. B. Hölting, Maximilian M. L. Knott in Ewing Sarcoma
    Protocol 2021
  13. Reduced representative methylome profiling of cell-free DNA for breast cancer detection

    Background

    Whole-genome methylation sequencing of cfDNA is not cost-effective for tumor detection. Here, we introduce reduced representative methylome...

    Qingmo Yang, **ngqiang Zhu, ... Hongliang Chen in Clinical Epigenetics
    Article Open access 27 February 2024
  14. DNA and Its Significance in Forensic Science

    The technique of DNA fingerprinting is considered as one of the enthralling innovations of the scientific era. The massive potential of the technique...
    Shivani Dixit, Manisha Rana, ... Pankaj Shrivastava in Textbook of Forensic Science
    Chapter 2023
  15. Reconfigurable Two-Dimensional DNA Molecular Arrays

    In biology, molecular cascade signaling is an essential tool to mediate various pathways and downstream behaviors. Mimicking these molecular cascades...
    Donglei Yang, Fan Xu, Pengfei Wang in DNA and RNA Origami
    Protocol 2023
  16. DNA Condensation Processes Mediated by Metal-Based Drug Entities and Morphological Studies

    The term ‘condensation’ is used to depict aggregates of a finite size with orderly morphology that are provoked by chemical agents, multivalent...
    Farukh Arjmand, Sartaj Tabassum, Huzaifa Yasir Khan in Advances and Prospects of 3-d Metal-Based Anticancer Drug Candidates
    Chapter 2024
  17. Detection of human neurotropic JCPyV DNA sequence in pediatric anaplastic xanthoastrocytoma

    Due to its peculiar histopathological findings, pleomorphic xanthoastrocytoma (PXA), a rare cerebral tumor of young adults with a slow growth and a...

    Sara Passerini, Carla Prezioso, ... Valeria Pietropaolo in Journal of NeuroVirology
    Article Open access 25 April 2023
  18. Analysis of the Genomic Sequences and Metabolites of Bacillus velezensis YA215

    Discovering more novel antimicrobial compounds has become a keen research problem. In this study, YA215 genome was sequenced by the Illumina...

    FuTian Yu, YuanYuan Shen, ... **aoLing Liu in Biochemical Genetics
    Article 22 February 2024
  19. Aptamers as Functional Modules for DNA Nanostructures

    Watson-Crick base-pairing of DNA allows the nanoscale fabrication of biocompatible synthetic nanostructures for diagnostic and therapeutic biomedical...
    Simon Chi-Chin Shiu, Andrew B. Kinghorn, ... Julian A. Tanner in DNA and RNA Origami
    Protocol 2023
  20. DNA Origami: Recent Progress and Applications

    This chapter explores the basic concept of DNA origami and its various types. By showing the progress made in structural DNA nanotechnology during...
    Michael Haydell, Yinzhou Ma in DNA and RNA Origami
    Protocol 2023
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