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  1. Article

    Open Access

    AMPK targets PDZD8 to trigger carbon source shift from glucose to glutamine

    The shift of carbon utilization from primarily glucose to other nutrients is a fundamental metabolic adaptation to cope with decreased blood glucose levels and the consequent decline in glucose oxidation. AMP-...

    Mengqi Li, Yu Wang, **aoyan Wei, Wei-Feng Cai, Jianfeng Wu, Mingxia Zhu in Cell Research (2024)

  2. No Access

    Article

    DNAJ protein gene expansion mechanism in Panicoideae and PgDNAJ functional identification in pearl millet

    Analyze the evolutionary pattern of DNAJ protein genes in the Panicoideae, including pearl millet, to identify and characterize the biological function of PgDNAJ genes in pearl millet.

    Yarong **, Jiyuan Jia, Yuchen Yang, **n Zhu in Theoretical and Applied Genetics (2024)

  3. Article

    Open Access

    The first two whole mitochondrial genomes for the genus Dactylis species: assembly and comparative genomics analysis

    Orchardgrass (Dactylis glomerata L.), a perennial forage, has the advantages of rich leaves, high yield, and good quality and is one of the most significant forage for grassland animal husbandry and ecological ma...

    Guangyan Feng, Yongjuan Jiao, Huizhen Ma, Haoyang Bian, Gang Nie in BMC Genomics (2024)

  4. Article

    Open Access

    Low glucose metabolite 3-phosphoglycerate switches PHGDH from serine synthesis to p53 activation to control cell fate

    Glycolytic intermediary metabolites such as fructose-1,6-bisphosphate can serve as signals, controlling metabolic states beyond energy metabolism. However, whether glycolytic metabolites also play a role in co...

    Yu-Qing Wu, Chen-Song Zhang, **ye **ong, Dong-Qi Cai, Chen-Zhe Wang in Cell Research (2023)

  5. No Access

    Article

    Thriving in the dynamics: a multi-level investigation of needs-supportive features, situational motivation, and employees’ subjective well-being

    Employees often demonstrate various regulatory intentions toward multiple responsibilities they must fulfill on the job. Therefore, it is possible that employees’ motivation changes during the workday because ...

    Zheni Wang, Alexandra Panaccio in Current Psychology (2023)

  6. Chapter

    Ten Key Problems of Pre-trained Models: An Outlook of Representation Learning

    The aforementioned representation learning methods have shown their effectiveness in various NLP scenarios and tasks. Large-scale pre-trained language models (i.e., big models) are the state of the art of repr...

    Ning Ding, Weize Chen, Zhengyan Zhang in Representation Learning for Natural Langua… (2023)

  7. Chapter

    Biomedical Knowledge Representation Learning

    As a subject closely related to our life and understanding of the world, biomedicine keeps drawing much attention from researchers in recent years. To help improve the efficiency of people and accelerate the p...

    Zheni Zeng, Zhiyuan Liu, Yankai Lin in Representation Learning for Natural Langua… (2023)

  8. Article

    Open Access

    The aldolase inhibitor aldometanib mimics glucose starvation to activate lysosomal AMPK

    The activity of 5′-adenosine monophosphate-activated protein kinase (AMPK) is inversely correlated with the cellular availability of glucose. When glucose levels are low, the glycolytic enzyme aldolase is not ...

    Chen-Song Zhang, Mengqi Li, Yu Wang, **aoyang Li, Yue Zong in Nature Metabolism (2022)

  9. Article

    Open Access

    Low-dose metformin targets the lysosomal AMPK pathway through PEN2

    Metformin, the most prescribed antidiabetic medicine, has shown other benefits such as anti-ageing and anticancer effects14. For clinical doses of metformin, AMP-activated protein kinase (AMPK) has a major role ...

    Teng Ma, **ao Tian, Baoding Zhang, Mengqi Li, Yu Wang, Chunyan Yang, Jianfeng Wu in Nature (2022)

  10. Article

    Open Access

    A deep-learning system bridging molecule structure and biomedical text with comprehension comparable to human professionals

    To accelerate biomedical research process, deep-learning systems are developed to automatically acquire knowledge about molecule entities by reading large-scale biomedical data. Inspired by humans that learn d...

    Zheni Zeng, Yuan Yao, Zhiyuan Liu, Maosong Sun in Nature Communications (2022)

  11. Article

    Open Access

    A role for neutrophils in early enthesitis in spondyloarthritis

    Neutrophils are present in the early phases of spondyloarthritis-related uveitis, skin and intestinal disease, but their role in enthesitis, a cardinal musculoskeletal lesion in spondyloarthritis, remains unkn...

    Zheni Stavre, Charles Bridgewood, Qiao Zhou, Yukiko Maeda in Arthritis Research & Therapy (2022)

  12. No Access

    Chapter and Conference Paper

    Natural Language Processing Using Database Context

    The usage of natural language in the industry has become more prevalent in recent years. Nowadays it is much easier to operate with complex infrastructures using natural language. This subfield of artificial i...

    Zheni Mincheva, Nikola Vasilev, Anatoliy Antonov in Intelligent Computing (2022)

  13. Article

    Open Access

    Improved cold tolerance in switchgrass by a novel CCCH-type zinc finger transcription factor gene, PvC3H72, associated with ICE1–CBF–COR regulon and ABA-responsive genes

    Switchgrass (Panicum virgatum) is a warm-season perennial grass. Improving its cold tolerance is important for its sustainable production in cooler regions. Through genome-wide bioinformatic analysis of switchgra...

    Zheni **e, Wen**g Lin, Guohui Yu, Qiang Cheng, Bin Xu in Biotechnology for Biofuels (2019)

  14. No Access

    Article

    Transcriptome analysis of Cd-treated switchgrass root revealed novel transcripts and the importance of HSF/HSP network in switchgrass Cd tolerance

    Transcriptome analysis of Cd-treated switchgrass roots not only revealed novel switchgrass transcripts and gene structures but also highlighted the indispensable role of HSF/HSP network in switchgrass Cd toler...

    Gang Song, Shaoxun Yuan, Xuehui Wen, Zheni **e, Laiqing Lou in Plant Cell Reports (2018)

  15. No Access

    Article

    Bone Loss in Rheumatoid Arthritis: Basic Mechanisms and Clinical Implications

    Patients with rheumatoid arthritis (RA) have historically developed progressive damage of articular bone and cartilage, which correlates with disability over time. In addition, these patients are prone to peri...

    Jae-hyuck Shim, Zheni Stavre, Ellen M. Gravallese in Calcified Tissue International (2018)

  16. No Access

    Article

    Influence of the pelletizing process parameters on the breakage behaviour of the received alumina oxide pellets

    Pelletizing is a common optimization process of the mechanical properties of various powder materials. The improvement of flow behaviour, dosage and the increase of bulk density are only a few the goals that t...

    Zheni Radeva, Eduard Lukas, Sergej Aman in Granular Matter (2018)

  17. Article

    Open Access

    Switchgrass PvDREB1C plays opposite roles in plant cold and salt tolerance in transgenic tobacco

    The C-repeat-binding factors/DRE-binding factors (CBF/DREBs) comprise a key transcription factor family involved in plant stress tolerance. Yet, there is limited information about switchgrass DREB genes and th...

    Wuwu Wen, Zheni **e, Guohui Yu, Chengliang Zhao, **g Zhang, Linkai Huang in Hereditas (2017)

  18. Article

    Open Access

    An efficient protocol for perennial ryegrass mesophyll protoplast isolation and transformation, and its application on interaction study between LpNOL and LpNYC1

    Perennial ryegrass (Lolium perenne L.) is an important temperate grass used for turf and forage purposes. With the increasing accumulation of genomic and transcriptomic data of perennial ryegrass, an efficient pr...

    Guohui Yu, Qiang Cheng, Zheni **e, Bin Xu, Bingru Huang, Bingyu Zhao in Plant Methods (2017)

  19. No Access

    Article

    Differential Effects of Inflammation on Bone and Response to Biologics in Rheumatoid Arthritis and Spondyloarthritis

    We review the pathways, cytokines, and concepts important to the pathogenesis of bone resorption and formation in rheumatoid arthritis (RA) and spondyloarthritis (SpA).

    Zheni Stavre, Katherine Upchurch, Jonathan Kay in Current Rheumatology Reports (2016)

  20. No Access

    Article

    Cardiolipin remodeling: a regulatory hub for modulating cardiolipin metabolism and function

    Cardiolipin (CL), the signature phospholipid of mitochondria, is involved in a plethora of cellular processes and is crucial for mitochondrial function and architecture. The de novo synthesis of CL in the mitocho...

    Cunqi Ye, Zheni Shen, Miriam L. Greenberg in Journal of Bioenergetics and Biomembranes (2016)

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