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  1. Article

    Open Access

    Automated pipette failure monitoring using image processing for point-of-care testing devices

    The accuracy and precision of liquid handling can be altered by several causes including wearing or failure of parts, and human error. The last cause is crucial since point-of-care testing (POCT) devices can b...

    Chan-Young Park, Jun Yeon, Hye-Jeong Song, Yu-Seop Kim in BioMedical Engineering OnLine (2018)

  2. Article

    Open Access

    A study of polymerase chain reaction device control via cloud using Firebase Cloud Messaging protocol

    In this paper, we propose a system for data monitoring and control of polymerase chain reaction (PCR) externally. PCR is a technique for amplifying a desired DNA molecule by repeatedly synthesizing a specific ...

    Jong-Dae Kim, So-Yeon Lee, Yu-Seop Kim, Hye-Jeong Song in BioMedical Engineering OnLine (2018)

  3. Article

    Open Access

    Comparison of named entity recognition methodologies in biomedical documents

    Biomedical named entity recognition (Bio-NER) is a fundamental task in handling biomedical text terms, such as RNA, protein, cell type, cell line, and DNA. Bio-NER is one of the most elementary and core tasks ...

    Hye-Jeong Song, Byeong-Cheol Jo, Chan-Young Park in BioMedical Engineering OnLine (2018)

  4. Article

    Open Access

    Evaluation-independent system for DNA section amplification

    In general, the image analysis of nucleic acid for detecting DNA is dependent on the gel documentation system. These experiments may deal with harmful staining agents and are time consuming. To address these i...

    Deuk-Ju Lee, Jong-Dae Kim, Yu-Seop Kim, Hye-Jeong Song in BioMedical Engineering OnLine (2018)

  5. Article

    Open Access

    Performance evaluation of optimal real-time polymerase chain reaction achieved with reduced voltage

    Polymerase chain reaction (PCR) is used in nucleic acid tests of infectious diseases in point-of-care testing. Previous studies have demonstrated real-time PCR that uses a micro-PCR chip made of packing tape, ...

    Ji-Soo Hwang, Jong-Dae Kim, Yu-Seop Kim, Hye-Jeong Song in BioMedical Engineering OnLine (2018)

  6. Article

    Open Access

    Best serum biomarker combination for ovarian cancer classification

    Screening test using CA-125 is the most common test for detecting ovarian cancer. However, the level of CA-125 is diverse by variable condition other than ovarian cancer. It has led to misdiagnosis of ovarian ...

    Hye-Jeong Song, Eun-Suk Yang, Jong-Dae Kim in BioMedical Engineering OnLine (2018)

  7. Article

    Open Access

    Permanent magnet actuation for magnetic bead-based DNA extraction

    Recently, automatic molecular diagnostic devices to extract DNA have been extensively developed using magnetic beads. While various methods can be applied to the control of the beads, the efficiency of the con...

    Chang-Young Park, Young-Hyun Park, Yu-Seop Kim in BioMedical Engineering OnLine (2018)

  8. Article

    Open Access

    A method of inferring the relationship between Biomedical entities through correlation analysis on text

    One of the most important processes in a machine learning-based natural language processing is to represent words. The one-hot representation that has been commonly used has a large size of vector and assumes ...

    Hye-Jeong Song, Byeong-Hun Yoon, Young-Shin Youn in BioMedical Engineering OnLine (2018)