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  1. No Access

    Article

    Cell segmentation in imaging-based spatial transcriptomics

    Single-molecule spatial transcriptomics protocols based on in situ sequencing or multiplexed RNA fluorescent hybridization can reveal detailed tissue organization. However, distinguishing the boundaries of ind...

    Viktor Petukhov, Rosalind J. Xu, Ruslan A. Soldatov, Paolo Cadinu… in Nature Biotechnology (2022)

  2. No Access

    Article

    Joint analysis of heterogeneous single-cell RNA-seq dataset collections

    Single-cell RNA sequencing is often applied in study designs that include multiple individuals, conditions or tissues. To identify recurrent cell subpopulations in such heterogeneous collections, we developed ...

    Nikolas Barkas, Viktor Petukhov, Daria Nikolaeva, Yaroslav Lozinsky… in Nature Methods (2019)