7 Result(s)
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Article
Open AccessCharacterizing compatibility and agreement of unrooted trees via cuts in graphs
Deciding whether there is a single tree —a supertree— that summarizes the evolutionary information in a collection of unrooted trees is a fundamental problem in phylogenetics. We consider two versions of this ...
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Article
Open AccessIncompatible quartets, triplets, and characters
We study a long standing conjecture on the necessary and sufficient conditions for the compatibility of multi-state characters: There exists a function f(r) such that, for any set C of r-state characters, C is co...
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Chapter and Conference Paper
Characterizing Compatibility and Agreement of Unrooted Trees via Cuts in Graphs
Deciding whether there is a single tree —a supertree— that summarizes the evolutionary information in a collection of unrooted trees is a fundamental problem in phylogenetics. We consider two versions of this ...
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Article
Open AccessExploring biological interaction networks with tailored weighted quasi-bicliques
Biological networks provide fundamental insights into the functional characterization of genes and their products, the characterization of DNA-protein interactions, the identification of regulatory mechanisms,...
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Chapter and Conference Paper
Improved Lower Bounds on the Compatibility of Quartets, Triplets, and Multi-state Characters
We study a long standing conjecture on the necessary and sufficient conditions for the compatibility of multi-state characters: There exists a function f(r) such that, for any set C of r-state characters, C is co...
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Chapter and Conference Paper
Fixed-Parameter Algorithms for Finding Agreement Supertrees
We study the agreement supertree approach for combining rooted phylogenetic trees when the input trees do not fully agree on the relative positions of the taxa. Two approaches to dealing with such conflicting ...
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Chapter and Conference Paper
Mining Biological Interaction Networks Using Weighted Quasi-Bicliques
Biological network studies can provide fundamental insights into various biological tasks including the functional characterization of genes and their products, the characterization of DNA-protein interactions...
