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  1. Article

    Open Access

    BPG: Seamless, automated and interactive visualization of scientific data

    We introduce BPG, a framework for generating publication-quality, highly-customizable plots in the R statistical environment.

    Christine P’ng, Jeffrey Green, Lauren C. Chong, Daryl Waggott in BMC Bioinformatics (2019)

  2. Article

    Open Access

    Compendium of TCDD-mediated transcriptomic response datasets in mammalian model systems

    2,3,7,8-tetrachlorodibenzo-p-dioxin (TCDD) is the most potent congener of the dioxin class of environmental contaminants. Exposure to TCDD causes a wide range of toxic outcomes, ranging from chloracne to acute le...

    Stephenie D. Prokopec, Kathleen E. Houlahan, Ren X. Sun, John D. Watson in BMC Genomics (2017)

  3. Article

    Open Access

    VennDiagramWeb: a web application for the generation of highly customizable Venn and Euler diagrams

    Visualization of data generated by high-throughput, high-dimensionality experiments is rapidly becoming a rate-limiting step in computational biology. There is an ongoing need to quickly develop high-quality v...

    Felix Lam, Christopher M. Lalansingh, Holly E. Babaran, Zhiyuan Wang in BMC Bioinformatics (2016)

  4. Article

    Open Access

    Male and female mice show significant differences in hepatic transcriptomic response to 2,3,7,8-tetrachlorodibenzo-p-dioxin

    2,3,7,8–tetrachlorodibenzo-p-dixion (TCDD) is the most potent of the dioxin congeners, capable of causing a wide range of toxic effects across numerous animal models. Previous studies have demonstrated that males...

    Jamie Lee, Stephenie D. Prokopec, John D. Watson, Ren X. Sun in BMC Genomics (2015)

  5. Article

    Open Access

    Cross-species transcriptomic analysis elucidates constitutive aryl hydrocarbon receptor activity

    Research on the aryl hydrocarbon receptor (AHR) has largely focused on variations in toxic outcomes resulting from its activation by halogenated aromatic hydrocarbons. But the AHR also plays key roles in regul...

    Ren X Sun, Lauren C Chong, Trent T Simmons, Kathleen E Houlahan in BMC Genomics (2014)