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  1. Article

    Open Access

    Evaluation of the upregulation and surface expression of hypoxanthine guanine phosphoribosyltransferase in acute lymphoblastic leukemia and Burkitt’s B cell lymphoma

    The aim of this study is to determine whether Hypoxanthine Guanine Phosphoribosyltransferase (HPRT) could be used as a biomarker for the diagnosis and treatment of B cell malignancies. With 4.3% of all new can...

    Michelle H. Townsend, Zac E. Ence, Taylor P. Cox in Cancer Cell International (2020)

  2. Article

    Publisher Correction: The molecular landscape of pediatric acute myeloid leukemia reveals recurrent structural alterations and age-specific mutational interactions

    In the version of this article originally published, the color key in Fig. 1a was wrong. In the Cytogenetics key, the box over t(8;21) originally was green. It should have been red, matching the color of the s...

    Hamid Bolouri, Jason E Farrar, Timothy Triche Jr, Rhonda E Ries in Nature Medicine (2019)

  3. Article

    Open Access

    Correction to: Membrane expression of thymidine kinase 1 and potential clinical relevance in lung, breast, and colorectal malignancies

    Following publication of the original article [1], the authors would like to make an amendment to the Acknowledgements section.

    Evita G. Weagel, Weston Burrup, Roman Kovtun in Cancer Cell International (2019)

  4. Article

    Open Access

    Potential new biomarkers for endometrial cancer

    Incidence of endometrial cancer are rising both in the United States and worldwide. As endometrial cancer becomes more prominent, the need to develop and characterize biomarkers for early stage diagnosis and t...

    Michelle H. Townsend, Zac E. Ence, Abigail M. Felsted in Cancer Cell International (2019)

  5. Article

    Open Access

    Membrane expression of thymidine kinase 1 and potential clinical relevance in lung, breast, and colorectal malignancies

    Lung, breast, and colorectal malignancies are the leading cause of cancer-related deaths in the world causing over 2.8 million cancer-related deaths yearly. Despite efforts to improve prevention methods, early...

    Evita G. Weagel, Weston Burrup, Roman Kovtun in Cancer Cell International (2018)

  6. Article

    Erratum: The molecular landscape of pediatric acute myeloid leukemia reveals recurrent structural alterations and age-specific mutational interactions

    Nat. Med.; 10.1038/nm.4439; corrected online 1 January 2018 In the version of this article initially published online, Figure 1a has two black boxes in the key that are labeled as 'Unknown'; these boxes should...

    Hamid Bolouri, Jason E Farrar, Timothy Triche Jr, Rhonda E Ries in Nature Medicine (2018)

  7. No Access

    Article

    The molecular landscape of pediatric acute myeloid leukemia reveals recurrent structural alterations and age-specific mutational interactions

    A comprehensive molecular analysis of almost 1,000 pediatric subjects with acute myeloid leukemia (AML) uncovers widespread differences in pediatric AML as compared to adult AML, including a higher frequency o...

    Hamid Bolouri, Jason E Farrar, Timothy Triche Jr, Rhonda E Ries in Nature Medicine (2018)

  8. Article

    Open Access

    Classifying cancer genome aberrations by their mutually exclusive effects on transcription

    Malignant tumors are typically caused by a conglomeration of genomic aberrations—including point mutations, small insertions, small deletions, and large copy-number variations. In some cases, specific chemothe...

    Jonathan B. Dayton, Stephen R. Piccolo in BMC Medical Genomics (2017)

  9. Article

    Open Access

    Activity of distinct growth factor receptor network components in breast tumors uncovers two biologically relevant subtypes

    The growth factor receptor network (GFRN) plays a significant role in driving key oncogenic processes. However, assessment of global GFRN activity is challenging due to complex crosstalk among GFRN components,...

    Mumtahena Rahman, Shelley M. MacNeil, David F. Jenkins in Genome Medicine (2017)

  10. Article

    Open Access

    Gene-expression patterns in peripheral blood classify familial breast cancer susceptibility

    Women with a family history of breast cancer face considerable uncertainty about whether to pursue standard screening, intensive screening, or prophylactic surgery. Accurate and individualized risk-estimation ...

    Stephen R. Piccolo, Irene L. Andrulis, Adam L. Cohen, Thomas Conner in BMC Medical Genomics (2015)

  11. Article

    Open Access

    Inferring pathway dysregulation in cancers from multiple types of omic data

    Although in some cases individual genomic aberrations may drive disease development in isolation, a complex interplay among multiple aberrations is common. Accordingly, we developed Gene Set Omic Analysis (GSO...

    Shelley M MacNeil, William E Johnson, Dean Y Li, Stephen R Piccolo in Genome Medicine (2015)

  12. No Access

    Article

    Robust meta-analysis shows that glioma transcriptional subty** complements traditional approaches

    Gliomas traditionally have been sub-classified based on histopathological observations. However, this approach is subject to inter-observer variability, and histopathological features may not reflect the biolo...

    Sanghoon Lee, Stephen R. Piccolo, Kristina Allen-Brady in Cellular Oncology (2014)

  13. Article

    Open Access

    Genomic pathway analysis reveals that EZH2 and HDAC4 represent mutually exclusive epigenetic pathways across human cancers

    Alterations in epigenetic marks, including methylation or acetylation, are common in human cancers. For many epigenetic pathways, however, direct measures of activity are unknown, making their role in various ...

    Adam L Cohen, Stephen R Piccolo, Luis Cheng, Rafaella Soldi in BMC Medical Genomics (2013)

  14. Article

    Open Access

    Multiplicity: an organizing principle for cancers and somatic mutations

    With the advent of whole-genome analysis for profiling tumor tissue, a pressing need has emerged for principled methods of organizing the large amounts of resulting genomic information. We propose the concept ...

    Lewis J Frey, Stephen R Piccolo, Mary E Edgerton in BMC Medical Genomics (2011)