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  1. Article

    Open Access

    RGmatch: matching genomic regions to proximal genes in omics data integration

    The integrative analysis of multiple genomics data often requires that genome coordinates-based signals have to be associated with proximal genes. The relative location of a genomic region with respect to the ...

    Pedro Furió-Tarí, Ana Conesa, Sonia Tarazona in BMC Bioinformatics (2016)

  2. Article

    Open Access

    Understanding disease mechanisms with models of signaling pathway activities

    Understanding the aspects of the cell functionality that account for disease or drug action mechanisms is one of the main challenges in the analysis of genomic data and is on the basis of the future implementa...

    Patricia Sebastian-Leon, Enrique Vidal, Pablo Minguez, Ana Conesa in BMC Systems Biology (2014)

  3. Article

    Open Access

    Pathway network inference from gene expression data

    The development of high-throughput omics technologies enabled genome-wide measurements of the activity of cellular elements and provides the analytical resources for the progress of the Systems Biology discipl...

    Ignacio Ponzoni, María José Nueda, Sonia Tarazona, Stefan Götz in BMC Systems Biology (2014)

  4. Article

    Open Access

    Functional assessment of time course microarray data

    Time-course microarray experiments study the progress of gene expression along time across one or several experimental conditions. Most developed analysis methods focus on the clustering or the differential ex...

    María José Nueda, Patricia Sebastián, Sonia Tarazona in BMC Bioinformatics (2009)