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  1. No Access

    Article

    Epigenetic control of myeloid cell differentiation, identity and function

  2. The interplay between transcription factors and epigenetic regulators is crucial for regulating gene-expression programmes during haematopoiesis. Epigenetic re...

  3. Damiana Álvarez-Errico, Roser Vento-Tormo, Michael Sieweke in Nature Reviews Immunology (2015)

  4. Article

    Open Access

    NF-κB-direct activation of microRNAs with repressive effects on monocyte-specific genes is critical for osteoclast differentiation

    Monocyte-to-osteoclast conversion is a unique terminal differentiation process that is exacerbated in rheumatoid arthritis and bone metastasis. The mechanisms implicated in upregulating osteoclast-specific gen...

    Lorenzo de la Rica, Antonio García-Gómez, Natalia R Comet in Genome Biology (2015)

  5. Article

    Open Access

    IL-4 orchestrates STAT6-mediated DNA demethylation leading to dendritic cell differentiation

    The role of cytokines in establishing specific transcriptional programmes in innate immune cells has long been recognized. However, little is known about how these extracellular factors instruct innate immune ...

    Roser Vento-Tormo, Carlos Company, Javier Rodríguez-Ubreva in Genome Biology (2016)

  6. No Access

    Article

    Exponential scaling of single-cell RNA-seq in the past decade

    Here Sarah Teichmann and colleagues provide a Perspective on the exponential scaling of single-cell RNA-sequencing experiments over the last decade, commenting on the methodological developments that have unde...

    Valentine Svensson, Roser Vento-Tormo, Sarah A Teichmann in Nature Protocols (2018)

  7. No Access

    Article

    Single-cell reconstruction of the early maternal–fetal interface in humans

    During early human pregnancy the uterine mucosa transforms into the decidua, into which the fetal placenta implants and where placental trophoblast cells intermingle and communicate with maternal cells. Tropho...

    Roser Vento-Tormo, Mirjana Efremova, Rachel A. Botting, Margherita Y. Turco in Nature (2018)

  8. No Access

    Article

    A cellular census of human lungs identifies novel cell states in health and in asthma

    Human lungs enable efficient gas exchange and form an interface with the environment, which depends on mucosal immunity for protection against infectious agents. Tightly controlled interactions between structu...

    Felipe A. Vieira Braga, Gozde Kar, Marijn Berg, Orestes A. Carpaij in Nature Medicine (2019)

  9. No Access

    Article

    Decoding human fetal liver haematopoiesis

    Definitive haematopoiesis in the fetal liver supports self-renewal and differentiation of haematopoietic stem cells and multipotent progenitors (HSC/MPPs) but remains poorly defined in humans. Here, using sing...

    Dorin-Mirel Popescu, Rachel A. Botting, Emily Stephenson, Kile Green, Simone Webb in Nature (2019)

  10. No Access

    Article

    CellPhoneDB: inferring cell–cell communication from combined expression of multi-subunit ligand–receptor complexes

    Cell–cell communication mediated by ligand–receptor complexes is critical to coordinating diverse biological processes, such as development, differentiation and inflammation. To investigate how the context-dep...

    Mirjana Efremova, Miquel Vento-Tormo, Sarah A. Teichmann in Nature Protocols (2020)

  11. No Access

    Protocol

    Inference of Ligand–Receptor Pairs from Single-Cell Transcriptomics Data

    Cell–cell communication is crucial for development and tissue homeostasis in multicellular organisms. Single-cell transcriptomics has emerged as a revolutionary technique for dissecting cellular compositions a...

    Mirjana Efremova, Roser Vento-Tormo in Stem Cell Renewal and Cell-Cell Communication (2021)

  12. No Access

    Article

    Inherent mosaicism and extensive mutation of human placentas

    Placentas can exhibit chromosomal aberrations that are absent from the fetus1. The basis of this genetic segregation, which is known as confined placental mosaicism, remains unknown. Here we investigated the phyl...

    Tim H. H. Coorens, Thomas R. W. Oliver, Rashesh Sanghvi, Ulla Sovio, Emma Cook in Nature (2021)

  13. Article

    Open Access

    A single cell characterisation of human embryogenesis identifies pluripotency transitions and putative anterior hypoblast centre

    Following implantation, the human embryo undergoes major morphogenetic transformations that establish the future body plan. While the molecular events underpinning this process are established in mice, they re...

    Matteo A. Molè, Tim H. H. Coorens, Marta N. Shahbazi in Nature Communications (2021)

  14. Article

    A roadmap for the Human Developmental Cell Atlas

    The Human Developmental Cell Atlas (HDCA) initiative, which is part of the Human Cell Atlas, aims to create a comprehensive reference map of cells during development. This will be critical to understanding nor...

    Muzlifah Haniffa, Deanne Taylor, Sten Linnarsson, Bruce J. Aronow, Gary D. Bader in Nature (2021)

  15. Article

    Open Access

    Map** the temporal and spatial dynamics of the human endometrium in vivo and in vitro

    The endometrium, the mucosal lining of the uterus, undergoes dynamic changes throughout the menstrual cycle in response to ovarian hormones. We have generated dense single-cell and spatial reference maps of th...

    Luz Garcia-Alonso, Louis-François Handfield, Kenny Roberts in Nature Genetics (2021)

  16. Article

    Author Correction: Inherent mosaicism and extensive mutation of human placentas

    Tim H. H. Coorens, Thomas R. W. Oliver, Rashesh Sanghvi, Ulla Sovio, Emma Cook in Nature (2022)

  17. Article

    Open Access

    Single-cell Atlas of common variable immunodeficiency shows germinal center-associated epigenetic dysregulation in B-cell responses

    Common variable immunodeficiency (CVID), the most prevalent symptomatic primary immunodeficiency, displays impaired terminal B-cell differentiation and defective antibody responses. Incomplete genetic penetran...

    Javier Rodríguez-Ubreva, Anna Arutyunyan, Marc Jan Bonder in Nature Communications (2022)

  18. No Access

    Article

    Cell2location maps fine-grained cell types in spatial transcriptomics

    Spatial transcriptomic technologies promise to resolve cellular wiring diagrams of tissues in health and disease, but comprehensive map** of cell types in situ remains a challenge. Here we present сell2locat...

    Vitalii Kleshchevnikov, Artem Shmatko, Emma Dann in Nature Biotechnology (2022)

  19. Article

    Open Access

    Robust temporal map of human in vitro myelopoiesis using single-cell genomics

    Myeloid cells are central to homeostasis and immunity. Characterising in vitro myelopoiesis protocols is imperative for their use in research, immunotherapies, and understanding human myelopoiesis. Here, we ge...

    Clara Alsinet, Maria Nascimento Primo, Valentina Lorenzi in Nature Communications (2022)

  20. Article

    Open Access

    An introduction to spatial transcriptomics for biomedical research

    Single-cell transcriptomics (scRNA-seq) has become essential for biomedical research over the past decade, particularly in developmental biology, cancer, immunology, and neuroscience. Most commercially availab...

    Cameron G. Williams, Hyun Jae Lee, Takahiro Asatsuma, Roser Vento-Tormo in Genome Medicine (2022)

  21. Article

    Open Access

    Single-cell roadmap of human gonadal development

    Gonadal development is a complex process that involves sex determination followed by divergent maturation into either testes or ovaries1. Historically, limited tissue accessibility, a lack of reliable in vitro mo...

    Luz Garcia-Alonso, Valentina Lorenzi, Cecilia Icoresi Mazzeo in Nature (2022)

  22. Article

    Open Access

    A physical wiring diagram for the human immune system

    The human immune system is composed of a distributed network of cells circulating throughout the body, which must dynamically form physical associations and communicate using interactions between their cell-su...

    Jarrod Shilts, Yannik Severin, Francis Galaway, Nicole Müller-Sienerth in Nature (2022)

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