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  1. Article

    Open Access

    Serine metabolism remodeling after platinum-based chemotherapy identifies vulnerabilities in a subgroup of resistant ovarian cancers

    Resistance to platinum-based chemotherapy represents a major clinical challenge for many tumors, including epithelial ovarian cancer. Patients often experience several response-relapse events, until tumors bec...

    Tom Van Nyen, Mélanie Planque, Lilian van Wagensveld in Nature Communications (2022)

  2. Article

    Open Access

    Author Correction: Tryptophan depletion results in tryptophan-to-phenylalanine substitutants

    Abhijeet Pataskar, Julien Champagne, Remco Nagel, Juliana Kenski, Maarja Laos in Nature (2022)

  3. Article

    Open Access

    Tryptophan depletion results in tryptophan-to-phenylalanine substitutants

    Activated T cells secrete interferon-γ, which triggers intracellular tryptophan shortage by upregulating the indoleamine 2,3-dioxygenase 1 (IDO1) enzyme14. Here we show that despite tryptophan depletion, in-fram...

    Abhijeet Pataskar, Julien Champagne, Remco Nagel, Juliana Kenski, Maarja Laos in Nature (2022)

  4. No Access

    Article

    Anti-tumour immunity induces aberrant peptide presentation in melanoma

    Extensive tumour inflammation, which is reflected by high levels of infiltrating T cells and interferon-γ (IFNγ) signalling, improves the response of patients with melanoma to checkpoint immunotherapy1,2. Many tu...

    Osnat Bartok, Abhijeet Pataskar, Remco Nagel, Maarja Laos, Eden Goldfarb in Nature (2021)

  5. Article

    Open Access

    Translatome analysis reveals altered serine and glycine metabolism in T-cell acute lymphoblastic leukemia cells

    Somatic ribosomal protein mutations have recently been described in cancer, yet their impact on cellular transcription and translation remains poorly understood. Here, we integrate mRNA sequencing, ribosome fo...

    Kim R. Kampen, Laura Fancello, Tiziana Girardi, Gianmarco Rinaldi in Nature Communications (2019)

  6. Article

    Open Access

    FcαRI co-stimulation converts human intestinal CD103+ dendritic cells into pro-inflammatory cells through glycolytic reprogramming

    CD103+ dendritic cells (DC) are crucial for regulation of intestinal tolerance in humans. However, upon infection of the lamina propria this tolerogenic response is converted to an inflammatory response. Here we ...

    Ivo S. Hansen, Lisette Krabbendam, Jochem H. Bernink in Nature Communications (2018)

  7. No Access

    Article

    Tumour-specific proline vulnerability uncovered by differential ribosome codon reading

    Tumours can require certain amino acids for their proliferation, and the diricore method described here helps to identify such restrictive amino acids; using this method in kidney cancer tissue and breast carc...

    Fabricio Loayza-Puch, Koos Rooijers, Levi C. M. Buil, Jelle Zijlstra in Nature (2016)

  8. Article

    Open Access

    Genome-wide profiling of p53-regulated enhancer RNAs uncovers a subset of enhancers controlled by a lncRNA

    p53 binds enhancers to regulate key target genes. Here, we globally mapped p53-regulated enhancers by looking at enhancer RNA (eRNA) production. Intriguingly, while many p53-induced enhancers contained p53-bin...

    Nicolas Léveillé, Carlos A. Melo, Koos Rooijers in Nature Communications (2015)

  9. Article

    Open Access

    Ribosome profiling reveals features of normal and disease-associated mitochondrial translation

    Mitochondria are essential cellular organelles for generation of energy and their dysfunction may cause diabetes, Parkinson’s disease and multi-systemic failure marked by failure to thrive, gastrointestinal pr...

    Koos Rooijers, Fabricio Loayza-Puch, Leo G. Nijtmans, Reuven Agami in Nature Communications (2013)

  10. Article

    Open Access

    Selective inhibition of microRNA accessibility by RBM38 is required for p53 activity

    MicroRNAs (miRNAs) interact with 3′-untranslated regions of messenger RNAs to restrict expression of most protein-coding genes during normal development and cancer. RNA-binding proteins (RBPs) can control the ...

    Nicolas Léveillé, Ran Elkon, Veronica Davalos in Nature Communications (2011)

  11. No Access

    Article

    A large-scale RNAi screen in human cells identifies new components of the p53 pathway

    RNA interference (RNAi) is a powerful new tool with which to perform loss-of-function genetic screens in lower organisms and can greatly facilitate the identification of components of cellular signalling pathways

    Katrien Berns, E. Marielle Hijmans, Jasper Mullenders, Thijn R. Brummelkamp in Nature (2004)

  12. No Access

    Article

    Interaction of c-Abl and p73α and their collaboration to induce apoptosis

    c-Abl, a non-receptor tyrosine kinase, is activated by agents that damage DNA. This activation results in either arrest of the cell cycle in phase G1 or apoptotic cell death, both of which are dependent on the...

    Reuven Agami, Giovanni Blandino, Moshe Oren, Yosef Shaul in Nature (1999)