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Lineage-dependent gene expression programs influence the immune landscape of colorectal cancer

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  1. Article

    Open Access

    Single-cell and bulk transcriptome sequencing identifies two epithelial tumor cell states and refines the consensus molecular classification of colorectal cancer

    The consensus molecular subtype (CMS) classification of colorectal cancer is based on bulk transcriptomics. The underlying epithelial cell diversity remains unclear. We analyzed 373,058 single-cell transcripto...

    Ignasius Joanito, Pratyaksha Wirapati, Nancy Zhao, Zahid Nawaz in Nature Genetics (2022)

  2. Article

    Open Access

    Report on the first SLFN11 monothematic workshop: from function to role as a biomarker in cancer

    SLFN11 is a recently discovered protein with a putative DNA/RNA helicase function. First identified in association with the maturation of thymocytes, SLFN11 was later causally associated, by two independent gr...

    Alberto Ballestrero, Davide Bedognetti in Journal of Translational Medicine (2017)

  3. Article

    Open Access

    Mutational analysis of anal cancers demonstrates frequent PIK3CA mutations associated with poor outcome after salvage abdominoperineal resection

    A better understanding of the molecular profile of anal squamous cell carcinomas (ASCCs) is necessary to consider new therapeutic approaches, and the identification of prognostic and predictive factors for res...

    Wulfran Cacheux, Etienne Rouleau, Adrien Briaux in British Journal of Cancer (2016)

  4. Article

    Open Access

    Are common fragile sites merely structural domains or highly organized “functional” units susceptible to oncogenic stress?

    Common fragile sites (CFSs) are regions of the genome with a predisposition to DNA double-strand breaks in response to intrinsic (oncogenic) or extrinsic replication stress. CFS breakage is a common feature in...

    Alexandros G. Georgakilas, Petros Tsantoulis in Cellular and Molecular Life Sciences (2014)