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  1. No Access

    Article

    High-quality MS/MS spectrum prediction for data-dependent and data-independent acquisition data analysis

    Peptide fragmentation spectra are routinely predicted in the interpretation of mass-spectrometry-based proteomics data. However, the generation of fragment ions has not been understood well enough for scientis...

    Shivani Tiwary, Roie Levy, Petra Gutenbrunner, Favio Salinas Soto… in Nature Methods (2019)

  2. Article

    MaxQuant goes Linux

    Pavel Sinitcyn, Shivani Tiwary, Jan Rudolph, Petra Gutenbrunner… in Nature Methods (2018)

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    Article

    OpenMS: a flexible open-source software platform for mass spectrometry data analysis

    OpenMS is a flexible, user-friendly, open-source software platform for the biological analysis of mass spectrometry proteomics and metabolomics data. The modular platform allows developers to seamlessly genera...

    Hannes L Röst, Timo Sachsenberg, Stephan Aiche, Chris Bielow… in Nature Methods (2016)