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    Chapter and Conference Paper

    Classification of Biochemical Pathway Robustness with Neural Networks for Graphs

    Dynamical properties of biochemical pathways are often assessed by performing numerical (ODE-based) or stochastic simulations. These methods are often computationally very expensive and require reliable quanti...

    Marco Podda, Pasquale Bove, Alessio Micheli in Biomedical Engineering Systems and Technol… (2021)

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    Chapter and Conference Paper

    Multiset Patterns and Their Application to Dynamic Causalities in Membrane Systems

    In this paper we investigate dynamic causalities in membrane systems by proposing the concept of “predictor”, originally defined in the context of Ehrenfeucht and Rozemberg’s reaction systems. The goal is to c...

    Roberto Barbuti, Roberta Gori, Paolo Milazzo in Membrane Computing (2018)

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    Book and Conference Proceedings

    Software Technologies: Applications and Foundations

    STAF 2016 Collocated Workshops: DataMod, GCM, HOFM, MELO, SEMS, VeryComp, Vienna Austria, July 4-8, 2016, Revised Selected Papers

    Paolo Milazzo, Dániel Varró in Lecture Notes in Computer Science (2016)

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    Chapter and Conference Paper

    A High-Level Model Checking Language with Compile-Time Pruning of Local Variables

    Among Model Checking tools, the behaviour of a system is often formalized as a transition system with atomic propositions associated with states (Kripke structure). In current modelling languages, transitions are...

    Giovanni Pardini, Paolo Milazzo in Software Technologies: Applications and Foundations (2016)

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    Chapter and Conference Paper

    Membrane Systems Working in Generating and Accepting Modes: Expressiveness and Encodings

    Membrane systems can be seen either as generators or as acceptors of multiset languages. In this paper we compare the expressive power of membrane systems working in accepting mode with that of membrane system...

    Roberto Barbuti, Andrea Maggiolo-Schettini, Paolo Milazzo in Membrane Computing (2011)

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    Chapter and Conference Paper

    The Calculus of Loo** Sequences

    We describe the Calculus of Loo** Sequences (CLS) which is suitable for modeling microbiological systems and their evolution. We present two extensions, CLS with links (LCLS) and Stochastic CLS. LCLS simplif...

    Roberto Barbuti, Giulio Caravagna in Formal Methods for Computational Systems B… (2008)

  7. Chapter and Conference Paper

    Modeling Long–Running Transactions with Communicating Hierarchical Timed Automata

    Long-running transactions consist of tasks which may be executed sequentially and in parallel, may contain sub-tasks, and may require to be completed before a deadline. These transactions are not atomic and, i...

    Ruggero Lanotte, Andrea Maggiolo-Schettini in Formal Methods for Open Object-Based Distr… (2006)