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  1. Article

    Open Access

    VDJPipe: a pipelined tool for pre-processing immune repertoire sequencing data

    Pre-processing of high-throughput sequencing data for immune repertoire profiling is essential to insure high quality input for downstream analysis. VDJPipe is a flexible, high-performance tool that can perfor...

    Scott Christley, Mikhail K. Levin, Inimary T. Toby, John M. Fonner in BMC Bioinformatics (2017)

  2. Article

    Open Access

    VDJML: a file format with tools for capturing the results of inferring immune receptor rearrangements

    The genes that produce antibodies and the immune receptors expressed on lymphocytes are not germline encoded; rather, they are somatically generated in each develo** lymphocyte by a process called V(D)J reco...

    Inimary T. Toby, Mikhail K. Levin, Edward A. Salinas, Scott Christley in BMC Bioinformatics (2016)

  3. Article

    Open Access

    owlcpp: a C++ library for working with OWL ontologies

    The increasing use of ontologies highlights the need for a library for working with ontologies that is efficient, accessible from various programming languages, and compatible with common computational platforms.

    Mikhail K. Levin, Lindsay G. Cowell in Journal of Biomedical Semantics (2015)