Skip to main content

and
  1. Article

    Open Access

    Genome-wide nucleotide patterns and potential mechanisms of genome divergence following domestication in maize and soybean

    Plant domestication provides a unique model to study genome evolution. Many studies have been conducted to examine genes, genetic diversity, genome structure, and epigenome changes associated with domesticatio...

    **yu Wang, **anran Li, Kyung Do Kim, Michael J. Scanlon in Genome Biology (2019)

  2. Article

    Open Access

    Correction to: Genome-wide discovery and characterization of maize long non-coding RNAs

    The original version [1] of this article unfortunately contained a mistake. The additive effects of the eQTLs of lncRNAs were flipped, meaning that the base allele in the contrast to derive the additive effect...

    Lin Li, Steven R. Eichten, Rena Shimizu, Katherine Petsch, Cheng-Ting Yeh in Genome Biology (2018)

  3. Article

    Open Access

    Substantial contribution of genetic variation in the expression of transcription factors to phenotypic variation revealed by eRD-GWAS

    There are significant limitations in existing methods for the genome-wide identification of genes whose expression patterns affect traits.

    Hung-ying Lin, Qiang Liu, **ao Li, **liang Yang, Sanzhen Liu in Genome Biology (2017)

  4. No Access

    Article

    Meristems take their cues from organ primordia

    Stem cell regulation is critical to the development of all multicellular organisms; in plants, stem cell niches reside in meristems. Two newly identified plant genes establish a novel signaling feedback from t...

    Josh Strable, Michael J Scanlon in Nature Genetics (2016)

  5. Article

    Open Access

    Leaves of grass: focusing phenomics on maize leaf growth

    The detailed analysis of leaf growth dynamics, when coupled with transcriptomic research, can facilitate the discovery of genes required for leaf elongation.

    Michael J. Scanlon in Genome Biology (2015)

  6. Article

    Open Access

    Genome-wide discovery and characterization of maize long non-coding RNAs

    Long non-coding RNAs (lncRNAs) are transcripts that are 200 bp or longer, do not encode proteins, and potentially play important roles in eukaryotic gene regulation. However, the number, characteristics and ex...

    Lin Li, Steven R Eichten, Rena Shimizu, Katherine Petsch, Cheng-Ting Yeh in Genome Biology (2014)

  7. No Access

    Chapter

    Mutagenesis by Transitive RNAi

    Transitive RNAi is a posttranscriptional mechanism of gene silencing that is based on the phenomenon of “transitivity.” This term refers to the spreading of silencing outside of the initial target sequence and...

    Katherine A. Petsch, Chonglie Ma, Michael J. Scanlon in Non Coding RNAs in Plants (2011)