7 Result(s)
within
John D. Osborne
English
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Protocol
Mining Biomedical Data Using MetaMap Transfer (MMTx) and the Unified Medical Language System (UMLS)
Detailed instruction is described for map** unstructured, free text data into common biomedical concepts (drugs, diseases, anatomy, and so on) found in the Unified Medical Language System using MetaMap Trans...
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Protocol
Interpreting Microarray Results With Gene Ontology and MeSH
Methods are described to take a list of genes generated from a microarray experiment and interpret these results using various tools and ontologies. A workflow is described that details how to convert gene ide...
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Article
Other riffs on cooperation are already showing how well a wiki could work
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Article
Open AccessAnnotating the human genome with Disease Ontology
The human genome has been extensively annotated with Gene Ontology for biological functions, but minimally computationally annotated for diseases.
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Article
Open AccessComparative genome analysis of Mycoplasma pneumoniae
Mycoplasma pneumoniae is a common pathogen that causes upper and lower respiratory tract infections in people of all ages, responsible for up to 40 % of community-acquired pneumonias. ...
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Article
Open AccessCUILESS2016: a clinical corpus applying compositional normalization of text mentions
Traditionally text mention normalization corpora have normalized concepts to single ontology identifiers (“pre-coordinated concepts”). Less frequently, normalization corpora have used concepts with multiple id...
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Article
Open AccessMulti-task transfer learning for the prediction of entity modifiers in clinical text: application to opioid use disorder case detection
The semantics of entities extracted from a clinical text can be dramatically altered by modifiers, including entity negation, uncertainty, conditionality, severity, and subject. Existing models for determining...
