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Protocol
Mining Biomedical Data Using MetaMap Transfer (MMTx) and the Unified Medical Language System (UMLS)
Detailed instruction is described for map** unstructured, free text data into common biomedical concepts (drugs, diseases, anatomy, and so on) found in the Unified Medical Language System using MetaMap Trans...
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Protocol
Interpreting Microarray Results With Gene Ontology and MeSH
Methods are described to take a list of genes generated from a microarray experiment and interpret these results using various tools and ontologies. A workflow is described that details how to convert gene ide...
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Article
Open AccessAnnotating the human genome with Disease Ontology
The human genome has been extensively annotated with Gene Ontology for biological functions, but minimally computationally annotated for diseases.
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Article
Open AccessComparative genome analysis of Mycoplasma pneumoniae
Mycoplasma pneumoniae is a common pathogen that causes upper and lower respiratory tract infections in people of all ages, responsible for up to 40 % of community-acquired pneumonias. ...