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Article
Identification of Protein–Protein Interaction Associated Functions Based on Gene Ontology
Protein–protein interactions (PPIs) involve the physical or functional contact between two or more proteins. Generally, proteins that can interact with each other always have special relationships. Some previo...
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Article
GSA: a GPU-accelerated structure similarity algorithm and its application in progressive virtual screening
A new algorithm is proposed for accelerating chemical structure similarity search by means of graphic processing unit technology. Experiments demonstrate that the new algorithm is on average more than 120-time...
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Article
Extension of the platform of applicability of the SM5.42R universal solvation model
We present eight new parameterizations of the SM5.42R solvation model: in particular we present parameterizations for HF/MIDI!, HF/6-31G*, HF/6-31+G*, HF/cc-pVDZ, AM1, PM3, BPW91/MIDI!, and B3LYP/MIDI!. Two of t...
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Article
MIDI! basis set for silicon, bromine, and iodine
The MIDI! basis set is extended to three new atoms: silicon, bromine, and iodine. The basis functions for these heteroatoms are developed from the standard 3-21G basis set by adding one Gaussian-type d subshell t...
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Article
Graphical representation of a new algorithm for nonorthogonalab initio valence bond calculations
A pictorial representation of the algorithm using successive expansion method for the nonorthogonal VB calculations is given. With the help of this representation and the graph analysis, the efficiency of this...
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Article
New algorithm for nonorthogonalab initio valence-bond calculations
A new algorithm for nonorthogonalab initio valence bond calculation has been deduced based on the left-coset decomposition of the symmetric groupS N . The strategy in the new ap...