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Identification and expression analysis of XIP gene family members in rice

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  1. Article

    Open Access

    Clonal growth characteristics and diversity patterns of different Clintonia udensis (Liliaceae) diploid and tetraploid cytotypes in the Hualongshan Mountains

    Polyploidization plays an important role in plant evolution and biodiversity. However, intraspecific polyploidy compared to interspecific polyploidy received less attention. Clintonia udensis (Liliaceae) possess ...

    Mian Han, Qiyang Qie, Meilan Liu, Huiqin Meng, Tiantian Wu, Yadi Yang in Scientific Reports (2024)

  2. Article

    Open Access

    Genome-wide identification, characterization and expression of C2H2 zinc finger gene family in Opisthopappus species under salt stress

    The C2H2 zinc finger protein family plays important roles in plants. However, precisely how C2H2s function in Opisthopappus (Opisthopappus taihangensis and Opisthopappus longilobus) remains unclear.

    **aojuan Zhou, Ting Gao, Yimeng Zhang, Mian Han, Yuexin Shen, Yu Su in BMC Genomics (2024)

  3. Article

    Open Access

    Localized environmental heterogeneity drives the population differentiation of two endangered and endemic Opisthopappus Shih species

    Climate heterogeneity not only indirectly shapes the genetic structures of plant populations, but also drives adaptive divergence by impacting demographic dynamics. The variable localized climates and topograp...

    Hang Ye, Zhi Wang, Huimin Hou, Jiahui Wu, Yue Gao, Wei Han in BMC Ecology and Evolution (2021)

  4. Article

    Open Access

    Demographic history and genetic differentiation of an endemic and endangered Ulmus lamellosa (Ulmus)

    Ulmus lamellosa (one of the ancient species of Ulmus) is an endemic and endangered plant that has undergone climatic oscillations and geographical changes. The elucidation of its demographic history and genetic d...

    Huimin Hou, Hang Ye, Zhi Wang, Jiahui Wu, Yue Gao, Wei Han in BMC Plant Biology (2020)

  5. Article

    Open Access

    Population genetic variation characterization of the boreal tree Acer ginnala in Northern China

    Genetic diversity and differentiation are revealed particularly through spatio-temporal environmental heterogeneity. Acer ginnala, as a deciduous shrub/small tree, is a foundation species in many terrestrial ecos...

    Hang Ye, Jiahui Wu, Zhi Wang, Huimin Hou, Yue Gao, Wei Han in Scientific Reports (2020)

  6. Article

    Open Access

    Map** dynamic QTL dissects the genetic architecture of grain size and grain filling rate at different grain-filling stages in barley

    Grain filling is an important growth process in formation of yield and quality for barley final yield determination. To explore the grain development behavior during grain filling period in barley, a high-dens...

    Binbin Du, Qifei Wang, Genlou Sun, **feng Ren, Yun Cheng in Scientific Reports (2019)

  7. Article

    Open Access

    Genome constitution and evolution of Elytrigia lolioides inferred from Acc1, EF-G, ITS, TrnL-F sequences and GISH

    Elytrigia lolioides (Kar. et Kir.) Nevski, which is a perennial, cross-pollinating wheatgrass that is distributed in Russia and Kazakhstan, is classified into Elytrigia, Elymus, and Lophopyrum genera by taxonomis...

    Long Wang, Yuanyuan Jiang, Qinghua Shi, Yi Wang, Lina Sha, **ng Fan in BMC Plant Biology (2019)

  8. Article

    Open Access

    Identification of QTL underlying the leaf length and area of different leaves in barley

    Leaf is the main organ of photosynthesis, which significantly impacts crop yield. A high-density linkage map containing 1894 single nucleotide polymorphism (SNP) and 68 simple sequence repeats (SSR) markers wa...

    Binbin Du, Lipan Liu, Qifei Wang, Genlou Sun, **feng Ren, Chengdao Li in Scientific Reports (2019)

  9. Article

    Open Access

    Transcriptome analysis reveals new microRNAs-mediated pathway involved in anther development in male sterile wheat

    337S is a novel bi-pole-photo-thermo-sensitive genic male sterile line in wheat, and sensitive to both long day length/high temperature and short day length/low temperature condition. Although the regulatory f...

    Longqing Sun, Genlou Sun, Chenxia Shi, Dongfa Sun in BMC Genomics (2018)

  10. Article

    Open Access

    Detection of QTLs for seedling characteristics in barley (Hordeum vulgare L.) grown under hydroponic culture condition

    Seedling characteristics play significant roles in the growth and development of barley (Hordeum vulgare L.), including stable stand establishment, water and nutrients uptake, biotic resistance and abiotic stress...

    Qifei Wang, Genlou Sun, **feng Ren, Jibin Wang, Binbin Du, Chengdao Li in BMC Genetics (2017)

  11. Article

    Open Access

    Transcriptome analysis reveals plant response to colchicine treatment during on chromosome doubling

    Colchicine was commonly used to artificially double chromosomes while the transcriptome changes in colchicine treated plants has rarely been characterized. To understand the molecular mechanism of colchicine o...

    Kai Zhou, Paige Fleet, Eviatar Nevo, **nquan Zhang, Genlou Sun in Scientific Reports (2017)

  12. Article

    Open Access

    Molecular evidence of RNA polymerase II gene reveals the origin of worldwide cultivated barley

    The origin and domestication of cultivated barley have long been under debate. A population-based resequencing and phylogenetic analysis of the single copy of RPB2 gene was used to address barley domestication, t...

    Yonggang Wang, **feng Ren, Dongfa Sun, Genlou Sun in Scientific Reports (2016)

  13. Article

    Open Access

    SNP-based high density genetic map and map** of btwd1 dwarfing gene in barley

    A high-density linkage map is a valuable tool for functional genomics and breeding. A newly developed sequence-based marker technology, restriction site associated DNA (RAD) sequencing, has been proven to be p...

    **feng Ren, Jibin Wang, Lipan Liu, Genlou Sun, Chengdao Li, Hong Luo in Scientific Reports (2016)

  14. Article

    Open Access

    Molecular evolution of Wcor15 gene enhanced our understanding of the origin of A, B and D genomes in Triticum aestivum

    The allohexaploid bread wheat originally derived from three closely related species with A, B and D genome. Although numerous studies were performed to elucidate its origin and phylogeny, no consensus conclusi...

    Fangfang Liu, Hongqi Si, Chengcheng Wang, Genlou Sun, Erting Zhou in Scientific Reports (2016)

  15. Article

    Open Access

    QTL underlying some agronomic traits in barley detected by SNP markers

    Increasing the yield of barley (Hordeum vulgare L.) is a main breeding goal in develo** barley cultivars. A high density genetic linkage map containing 1894 SNP and 68 SSR markers covering 1375.8 cM was constru...

    Jibin Wang, Genlou Sun, **feng Ren, Chengdao Li, Lipan Liu, Qifei Wang in BMC Genetics (2016)

  16. Article

    Open Access

    Identification of QTL underlying physiological and morphological traits of flag leaf in barley

    Physiological and morphological traits of flag leaf play important roles in determining crop grain yield and biomass. In order to understand genetic basis controlling physiological and morphological traits of ...

    Lipan Liu, Genlou Sun, **feng Ren, Chengdao Li, Dongfa Sun in BMC Genetics (2015)

  17. Article

    Open Access

    Inheritance and identification of molecular markers associated with a novel dwarfing gene in barley

    Dwarfing genes have widely been used in barley breeding program. More than 30 types of dwarfs or semidwarfs have been reported, but a few has been exploited in barley breeding because pleiotropic effects of dw...

    **feng Ren, Dongfa Sun, Weiwei Guan, Genlou Sun, Chengdao Li in BMC Genetics (2010)