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  1. Article

    Open Access

    A perl package and an alignment tool for phylogenetic networks

    Phylogenetic networks are a generalization of phylogenetic trees that allow for the representation of evolutionary events acting at the population level, like recombination between genes, hybridization between...

    Gabriel Cardona, Francesc Rosselló, Gabriel Valiente in BMC Bioinformatics (2008)

  2. Article

    Open Access

    Extended Newick: it is time for a standard representation of phylogenetic networks

    Phylogenetic trees resulting from molecular phylogenetic analysis are available in Newick format from specialized databases but when it comes to phylogenetic networks, which provide an explicit representation ...

    Gabriel Cardona, Francesc Rosselló, Gabriel Valiente in BMC Bioinformatics (2008)

  3. Article

    Open Access

    Cophenetic metrics for phylogenetic trees, after Sokal and Rohlf

    Phylogenetic tree comparison metrics are an important tool in the study of evolution, and hence the definition of such metrics is an interesting problem in phylogenetics. In a paper in Taxon fifty years ago, S...

    Gabriel Cardona, Arnau Mir, Francesc Rosselló, Lucía Rotger in BMC Bioinformatics (2013)

  4. Article

    Open Access

    A reconstruction problem for a class of phylogenetic networks with lateral gene transfers

    Lateral, or Horizontal, Gene Transfers are a type of asymmetric evolutionary events where genetic material is transferred from one species to another. In this paper we consider LGT networks, a general model of p...

    Gabriel Cardona, Joan Carles Pons, Francesc Rosselló in Algorithms for Molecular Biology (2015)