5 Result(s)

Article

Spatial epigenome–transcriptome co-profiling of mammalian tissues

Emerging spatial technologies, including spatial transcriptomics and spatial epigenomics, are becoming powerful tools for profiling of cellular states in the tissue context^1–5. However, current methods capture on...

Di Zhang, Yanxiang Deng, Petra Kukanja, Eneritz Agirre, Marek Bartosovic… in Nature (2023)

Article

Author Correction: RADICL-seq identifies general and cell type–specific principles of genome-wide RNA-chromatin interactions

Alessandro Bonetti, Federico Agostini, Ana Maria Suzuki… in Nature Communications (2021)

Article

RADICL-seq identifies general and cell type–specific principles of genome-wide RNA-chromatin interactions

Mammalian genomes encode tens of thousands of noncoding RNAs. Most noncoding transcripts exhibit nuclear localization and several have been shown to play a role in the regulation of gene expression and chromat...

Alessandro Bonetti, Federico Agostini, Ana Maria Suzuki… in Nature Communications (2020)

Article

A chromatin code for alternative splicing involving a putative association between CTCF and HP1α proteins

Alternative splicing is primarily controlled by the activity of splicing factors and by the elongation of the RNA polymerase II (RNAPII). Recent experiments have suggested a new complex network of splicing reg...

Eneritz Agirre, Nicolás Bellora, Mariano Alló, Amadís Pagès, Paola Bertucci… in BMC Biology (2015)

Article

Databases and resources for human small non-coding RNAs

Recent advances in high-throughput sequencing have facilitated the genome-wide studies of small non-coding RNAs (sRNAs). Numerous studies have highlighted the role of various classes of sRNAs at different leve...

Eneritz Agirre, Eduardo Eyras in Human Genomics (2011)