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  1. Article

    Phylogenetic and phylodynamic approaches to understanding and combating the early SARS-CoV-2 pandemic

    Determining the transmissibility, prevalence and patterns of movement of severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2) infections is central to our understanding of the impact of the pandemic an...

    Stephen W. Attwood, Sarah C. Hill, David M. Aanensen in Nature Reviews Genetics (2022)

  2. Article

    Open Access

    A community-driven resource for genomic epidemiology and antimicrobial resistance prediction of Neisseria gonorrhoeae at Pathogenwatch

    Antimicrobial-resistant (AMR) Neisseria gonorrhoeae is an urgent threat to public health, as strains resistant to at least one of the two last-line antibiotics used in empiric therapy of gonorrhoea, ceftriaxone a...

    Leonor Sánchez-Busó, Corin A. Yeats, Benjamin Taylor, Richard J. Goater in Genome Medicine (2021)

  3. No Access

    Article

    Dense genomic sampling identifies highways of pneumococcal recombination

    Stephen Bentley, Paul Turner and colleagues report whole-genome sequencing of 3,085 pneumococci collected from a densely sampled pneumococcal carriage cohort in a Thai refugee camp over a 3-year period. They p...

    Claire Chewapreecha, Simon R Harris, Nicholas J Croucher, Claudia Turner in Nature Genetics (2014)