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Chapter and Conference Paper
TDA-Clustering Strategies for the Characterization of Brain Organoids
We propose to use Topological Data Analysis (TDA) to characterize the morphological development of brain organoids. We combine TDA with clustering strategies to characterize the morphology of three development...
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Chapter and Conference Paper
Adversarial Stain Transfer to Study the Effect of Color Variation on Cell Instance Segmentation
Stain color variation in histological images, caused by a variety of factors, is a challenge not only for the visual diagnosis of pathologists but also for cell segmentation algorithms. To eliminate the color ...
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Chapter and Conference Paper
Surface-Based Structural Group Analysis of fMRI Data
As structural and surface-based analyses gain interest for activation detection, morphometry and intersubject matching purposes, this paper proposes a method to perform structural group analyses directly on th...
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Chapter and Conference Paper
A New Cortical Surface Parcellation Model and Its Automatic Implementation
In this paper, we present an original method that aims at parcellating the cortical surface in regions functionally meaningful, from individual anatomy. The parcellation is obtained using an anatomically const...
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Chapter and Conference Paper
Towards an Anatomically Meaningful Parameterization of the Cortical Surface
We present here a method that aims at defining a surface-based coordinate system on the cortical surface. Such a system is needed for both cortical localization and intersubject matching in the framework of ne...